Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01937 ATGTCGGAGATGGCTCAGAAGGATCCCGAAGGTGTGGACGGAGTGCGCATGACGTGGAACCTGTGGCCGCGCACCAAGGTGGAGGCGAGCAAGTGCGTCATACCCCTCGCCGCAACCATTGCCCTCCTCCGCCCCCACCCAGACATTCCCCCAACGCTACCTTACGCGCCTCTCCGCTGCAAGACCTGTTCCTCCGTCCTCAACCCCTTCTCGCGCGTCGACTTGACCGCCAAGATCTGGATCTGTCCCTTCTGCTACAACCGCAACCACTTTCCACCTCACTACGCCCAAATCTCGGAAACGAATCTCCCTGCCGAACTCTATCCCCAATACACCACTCTGGAATACCAACTCAACAACAGCAACATCAACCCTAACCTTACCCATCCCCCTGTCTTCCTCTTCCTCCTCGACACCTGCGTCATTGCCGAAGAGCTCCACTTTCTCAAATCCGCGCTCCGCCAGGCCCTCGGGCTTCTTCCCGACAACGCGCTCGTTGGCTTCATGTCATTTGGCACGCAGGTCCAGGTGCATGAGCTGGGCTTCTCCGACATTTCCAAGGTTTACGTGTTCCGTGGGAGCAAGGACATTCCCAAAGATCAGATTTTGGAACAGTTAGGTCTCACCGCCGCCAGGAGGGTCTATCCCAAGGGGGGGACGACACTGGCTCAGCCACCTTCTGCTGCTGTCACCAGGTTCTTGCTGCCTGCTTCTGATTGTGAATACACTCTCAATTCGGTGTTGGATGAATTGCAAACTGACCAATGGCCGGTTTCGATCGGGAAGCGCCCTGCACGGTGTACAGGCGTGGCGTTGAGCGTAGCAACGGGGTTGCTTGGTGCTTGTAATCCCGGGACTGGGGCTAGGATCATTGCTTTGGTTGGTGGTCCCTGCACTGAAGGACCTGGTTCGATTGTGTCAAAAGATCTATCTGATCCGTTGCGTTCTCATAAAGATCTTGATAAGGATGCAGCACCATACTTCAAGAAAGCAGTTAAGTTTTACGAGGGTCTTGCGAAACAGCTGGTTATCCAGGGTCACGTTTTAGATCTTTTTGCATCAGCCCTTGATCAGGTTGGAGTAGCAGAAATCAAAGTTGCAGTTGAAAAAACTGGTGGCCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCGGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGATGGAGAGCAATCTCATGGCCTTTGCTTCAACAAACATGCTCACTACCTATTCTGTTTATTTAACAGTGGAACACTTGAGATTAATTGCTCCAAGGAAATCAAAATTCAGGGTATAATTGGACCTTGCACATCTTTGGAAAAGAAAGGGCCTTCTGTTGCTGATAGTGTGATAGGGGAGGGAAACACAACAACTTGGAAACTGTGTGGCCTTGACAAGAGTACATGTTTGACTGTGCTGTTTGATCTTTCGTCAAGTGACCATTCAAACACTCCAACTATTACTAACCCACAGTTGTATCTGCAATTTCTTACAAGTTACCAGAGTCCAAACGGTGCTGCTTCACTGGGTGATGCGGTTGGTGGCATGGCCACGACAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGATAAGGAAGTCAAATTGGGAGGGGATTACAAAGCAATCGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTAGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATAACCTGACTAATGTTATGATTTTAATATACCGTGGAATAAGTGGCCAAGATTATGAGAAGTTACCAGTTGGATTTTTTGATAGAAATGGAGAATTTATTCAGAGTTCTATAATAGCAAACAAGAGAATTGATGCTGGTGGGAATATACTTGGCTGTTTTTGCTTCTTGCAGGTTGTAACGTCAGATTTGAATCAGTTATCTGAAGAACACAAGCCAATAAGCAGAGAAAACAATTCGGAATCCAAAGAGTTAGCTTATATACTACAAGAGATTGAAACCACGACTTTGTCTTGGAGCTTGAGCCAAGCGGAATTTGTGGAGGGGGAGACAGGAGAGAGTGACTTAACTCCCAATAAAGAGGGACTTGCAGAGGGGAGAGAGCTGCCGGAAGCATTGAAAGACATCAAAGATCATCTTCTCTGGGCTTATAGTTTTGAAAAAGAGGAATTGGTCCAAGGATTTGACCAAGAAACTGGTGCAGTAGTAATGGCAAGGCTTGCGTCTATAAAAATGGAGACAGAGGAAGCATTTGATGCCACACGATGGTTGGACCGTTTACTAATTCGCCTCTGCTCTAAATTTGGTGACTACCGCAAGGATGACCCGTCATCTTTTACATTAAATCCATCATTTTCCTTATTCCCCCAATTTATGTTCAATCTGCGAAGATCACAGTTTGTACAGGTTTTTAATAACAGTCCAGATGAGACTGCATACTTCCGCATGTTGTTAAATAGGGAAAATATAAGTAATGCCGTCGTCATGATTCAGCCATCCCTAATATCATATTCATTTAATTCGTTGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTTCAGCAGACCGGATTTTGTTGCTTGATTCATATTTTAGTGTGGTTATTTTTCATGGAATGACAATAGCCCAATGGCGCAACATGGGATACCATAACCAGCCAGAGCACCAGGCATGCACACACTTCTCATATATTTCCTGCTAA 2802 0.4629 MSEMAQKDPEGVDGVRMTWNLWPRTKVEASKCVIPLAATIALLRPHPDIPPTLPYAPLRCKTCSSVLNPFSRVDLTAKIWICPFCYNRNHFPPHYAQISETNLPAELYPQYTTLEYQLNNSNINPNLTHPPVFLFLLDTCVIAEELHFLKSALRQALGLLPDNALVGFMSFGTQVQVHELGFSDISKVYVFRGSKDIPKDQILEQLGLTAARRVYPKGGTTLAQPPSAAVTRFLLPASDCEYTLNSVLDELQTDQWPVSIGKRPARCTGVALSVATGLLGACNPGTGARIIALVGGPCTEGPGSIVSKDLSDPLRSHKDLDKDAAPYFKKAVKFYEGLAKQLVIQGHVLDLFASALDQVGVAEIKVAVEKTGGLVVLSESFGHSVFKDSFKRVFEDGEQSHGLCFNKHAHYLFCLFNSGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADSVIGEGNTTTWKLCGLDKSTCLTVLFDLSSSDHSNTPTITNPQLYLQFLTSYQSPNGAASLGDAVGGMATTRINSKHFLFWFRSHTDKEVKLGGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPSEIFGSFCRLKGQDNLTNVMILIYRGISGQDYEKLPVGFFDRNGEFIQSSIIANKRIDAGGNILGCFCFLQVVTSDLNQLSEEHKPISRENNSESKELAYILQEIETTTLSWSLSQAEFVEGETGESDLTPNKEGLAEGRELPEALKDIKDHLLWAYSFEKEELVQGFDQETGAVVMARLASIKMETEEAFDATRWLDRLLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAVVMIQPSLISYSFNSLPAPALLDVASISADRILLLDSYFSVVIFHGMTIAQWRNMGYHNQPEHQACTHFSYISC 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01937 933 SMART pas_2 544 614 IPR000014 -
Vimu11g01937 933 SUPERFAMILY Zn-finger domain of Sec23/24 49 120 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu11g01937 933 Pfam Sec23/Sec24 beta-sandwich domain 419 508 IPR012990 -
Vimu11g01937 933 SUPERFAMILY PYP-like sensor domain (PAS domain) 559 661 IPR035965 -
Vimu11g01937 933 FunFam Protein transport protein SEC23 54 113 - -
Vimu11g01937 933 CDD PAS 556 666 IPR000014 -
Vimu11g01937 933 ProSiteProfiles PAS repeat profile. 545 590 IPR000014 -
Vimu11g01937 933 Gene3D Severin 869 930 IPR029006 -
Vimu11g01937 933 Pfam Sec23/Sec24 trunk domain 129 394 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu11g01937 933 Gene3D - 10 509 - -
Vimu11g01937 933 FunFam Protein transport protein SEC23 759 880 - -
Vimu11g01937 933 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 6 508 IPR037364 -
Vimu11g01937 933 Pfam Gelsolin repeat 874 924 IPR007123 -
Vimu11g01937 933 SUPERFAMILY beta-sandwich domain of Sec23/24 8 508 - -
Vimu11g01937 933 Gene3D - 54 113 - -
Vimu11g01937 933 Gene3D Sec23/Sec24 helical domain 750 868 - -
Vimu11g01937 933 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 865 927 IPR036180 -
Vimu11g01937 933 Pfam Sec23/Sec24 helical domain 762 859 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu11g01937 933 Pfam Sec23/Sec24 zinc finger 57 95 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu11g01937 933 SUPERFAMILY Helical domain of Sec23/24 762 864 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu11g01937 933 FunFam Phytochrome 558 666 - -
Vimu11g01937 933 FunFam Protein transport protein SEC23 130 404 - -
Vimu11g01937 933 SUPERFAMILY GAF domain-like 505 545 - -
Vimu11g01937 933 Pfam PAS fold 545 665 IPR013767 GO:0006355
Vimu11g01937 933 Gene3D PAS domain 558 670 - -
Vimu11g01937 933 Gene3D von Willebrand factor, type A domain 130 415 IPR036465 -
Vimu11g01937 933 SUPERFAMILY vWA-like 130 395 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01937 Vimu-Chr11 29914438 29927241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01937 537 731 Histidine Kinase Gene Family AT4G16250 50.256 2.80e-52 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01937 K14006 - gmx:100813940 838.565