Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01918 ATGCCTGCCCTCATCGATCTTAACAGCGCCACCGAGGACAATGAAACGCCACCGTCTCGCCCCTCCTACGTCTGCCTCGAACTCTGGCACGCCTGCGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGAACTCTTGTCGTGTACTTCCCTCAAGGACACTTGGAACAACACCTTCACGATTTTCCGCTTCCTGCGTCTGCTAACATCCCTTCCCATCTCTTCTGTCGTGTTCTCGATGTCAAGCTCCATCAAGTGCATCAGAAGTTGCGGGAAGGGGAAATTGATGCTGATGGTGAGGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGGCAACCACGACGACACTTGCTTACTACTGGGTGGAGTGCATTTGTGA 480 0.5333 MPALIDLNSATEDNETPPSRPSYVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHQVHQKLREGEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLGNHDDTCLLLGGVHL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01918 159 Gene3D - 113 153 IPR015300 -
Vimu11g01918 159 SUPERFAMILY DNA-binding pseudobarrel domain 107 148 IPR015300 -
Vimu11g01918 159 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 145 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01918 Vimu-Chr11 29255691 29257096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01918 22 144 B3 DNA Binding Superfamily AT5G60450 49.660 8.71e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01918 K14486 - gmx:100796970 248.825