Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01911 ATGGCGTGCGCGGAGGCCGTAGAAAACAACAACCTCGTCGTCGCGGAGTCGTTGGTGAAGCAGATCGGATTCCTTGCGGTGTCACAAGTTGGAGCTATGCGGAAAGTCGCCACCTACTTTGCGGAAGCGCTCGCAAGGCGAATCTATCGCGTTTTCCCTCTCCAGCACTCAATCTCAGACTCTCTCGAGATTAACTTCTACGAAACCTGTCCTTACACCAAGTTCGCTCACTTCACCGCGAACCAAGCTATTCTGGAAGCGTTCCAAGGGAAGAGCCGCGTTCACGTCATAGATTTCGGAATCAACCAGGGGATGCAGTGGCCGGCACTGTTGCAGGCTCTCGCCCTTCGTCCCGGCGGTCCTCCTGCTTTCCGGCTCACCGGAATCGGGCCTCCAGCAGCGGATAACTCCGACCAACTCCAGGAAGTCGGATGGAAGCTCGCACAGTTGGCAGAGACGATTCATGTGCGGTTTGAGTACCGCGGCTTTGTCGCCAACAGCCTCGCCGATCTCGATGCTTCCATGCTCGACCTCCGTGAAGATGAGCCCGTGGCGGTCAACTCCGTCTTCGAGTTTCACAAACTCCTCGCGCGCCCCGGCGCCATCGAGAAGGTCCTCTCCGTTGTCCGTAAAATTCGGCCTGAGATTCTGACCGTGGTGGAGCAAGAATCGAATCACAACGGATCGGTGGAGGGCTCGCCTATGAATCCACAGAATAAGACGATGACGGAGGTTTACCTAGGAAATCAAATATGTAACGTGGTGGCCTGCGAGGGAATAGACCGCGTGGAACGGCACGAGACCCTTAACCAGTGGCGGCACCGGTTCAGTTCGACAGGGTTTTGTCCGGTTCATTTGGGTTCCAACGCGTTCAAGCAGGCTAGCATGTTGCTCGCTCTTTTTGCTGGTGGGGATGGGTATAGGGTGGAGGAGAACAGTGGGTGTCTCATGCTGGGGTGGCACACAAGGGCCTTGATTGCCACTTCAGCGTGGCAACTCGCTGCGAAATCGGTGGTTATACTCTGA 1026 0.5614 MACAEAVENNNLVVAESLVKQIGFLAVSQVGAMRKVATYFAEALARRIYRVFPLQHSISDSLEINFYETCPYTKFAHFTANQAILEAFQGKSRVHVIDFGINQGMQWPALLQALALRPGGPPAFRLTGIGPPAADNSDQLQEVGWKLAQLAETIHVRFEYRGFVANSLADLDASMLDLREDEPVAVNSVFEFHKLLARPGAIEKVLSVVRKIRPEILTVVEQESNHNGSVEGSPMNPQNKTMTEVYLGNQICNVVACEGIDRVERHETLNQWRHRFSSTGFCPVHLGSNAFKQASMLLALFAGGDGYRVEENSGCLMLGWHTRALIATSAWQLAAKSVVIL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01911 341 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 328 IPR005202 -
Vimu11g01911 341 ProSiteProfiles GRAS family profile. 1 332 IPR005202 -
Vimu11g01911 341 Pfam GRAS domain family 1 229 IPR005202 -
Vimu11g01911 341 Pfam GRAS domain family 235 332 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01911 Vimu-Chr11 28890782 28891864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01911 1 334 GRAS Transcription Factor Family AT1G14920 73.538 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu11g01911 GRAS 1.1e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01911 K14494 - gmx:547718 594.734