Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01910 ATGATGATTACCACCTTCGTGGCCGACGCCGATGACGCAGTGATGTCCAATTTCCTTCAATCGCTGAAGCCAACACCCCCAGGTTGGTCTCAGTCAACCCCATTCTGCCAATGGGAGGGTATCCAATGCGATTCGTCGAACCGCGTCACCAGCATAAGCCTCGCTTCAAAGTCCCTCACCGGAACGCTCCCCTCCGATCTCAATTCCCTCTCACAACTCCGCTCCCTCTCTCTCCAAGACAATGCACTCTCAGGCCCCCTCCCCTCTCTCGCCCAACTCTCCTTCCTCCAAACGGCCTACCTCAACCGCAACAACTTTTCAGCCGTTCCCTTCGCCGCCTTCGCCGCCCTGAACTCTCTCCAAACCCTCAGCCTAGCTTCAAACCCTTCCCTCTCACCCTGGACTTTCCCCACCGATCTCACCTCCTCCACCAACCTAATCGACCTCGACCTCGGCACTGTTTCCCTCTCCGGTGCCTTACCCGACATCTTCAACAAATTTCCCTCTCTAAAGAGTCTTCGCCTCTCCTACAACAACTTGACTGGTAGTTTACCGTCCTCTCTTGCCATTTCCCCAATTGTCTCGCTCTGGCTCAACAACCAGGCCACCGGCTTGTCCGGTACTCTCTCCGTTCTCTCCAACATGACGCAGTTGAGCCAAGCCTGGCTCCACAAGAACCAGTTCACCGGTTCCATTCCGGATTTGTCCCAATGCAAGGGCCTGTTTGACTTGCAGCTCCGAGATAACCGGCTAACCGGCGTGGTTCCTATTTCCTTGATGACTCTTTCGAGTTTAAAGAATGTTTCGCTGGATAACAACGAGCTTCAGGGCCCTGTGCCTGCTTTTGGGAAGGGTGTGAAGGTGACTCTCGATGGAATCAATAGCTTTTGCCTCGATACTCCCGGTGATTGTGATCCCCGGGTGATGGTTTTGCTTCAGATTGCTGAAGCGTTTGGGTATCCCATTCAGTTGGCGAGTGCGTGGCAGGGGAATGACCCTTGTAACGGCTGGAACTTTGTTGTGTGTTCCACTGGAAAGATTGTTACTGTTAATTTCGCAAAGCAGGGTTTTCGGGGTACCATCTCGCCTGCATTTTCGCAATTAACTGATTTGCGCAGCTTGTTTCTCAATGGAAATAACTTGATCGGTTCTATTCCTGAGAGTTTGACCTCTTTGCCTCAGCTTCAGACTCTTGATGTGTCCGATAACAACCTCTCTGGAGAGATTCCTAAGTTCCCGTCCAAGGTGAAGTTAGTGACTACCGGTAATGCTAGGCTTGGGAAGGCTCCTAATCCTGGAGGTGGAGCAAGTGGATCTACTCCTTCAGGGTCTCCACCTAATGGAAGTGGCCCTGAATCTGCACAGGGTAGTGCTTCTTTGTCGCCAGGTTGGATTGGTGGTATAGTTGTTATTGTTTTGTTTTTTACTGCAGTAGTATTGTTTCTGTCTTGGAAGTGTTATGCCAAAAGGCAGCGGCGGAAGTTCAGGAGGGTTAATGGTCGTGAAAATGGCAAAGGAAGCTTTAAAATTGAGTCTATCAATGTTTATAATGGTTATGGTGGTCTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCTGTGACGTTCTTGCTGCTTTTGAAGGTCGAAATGGGTCGATTTCTATTCAAATTCTTCTACAAGTTACCAATAATTTTAGTGAGGAGAATATTTTAGGTAGGGGAGGGTTTGGAGTGGTTTATAGGGGGGAGTTGCATGATGGAACAAAGATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGAAATAAAGGACTTAATGAGTTTCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTTGGGTACTGCGTCAATGGAAATGAAAGGCTTTTGGTATATGAGTATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGGACATGGCTATGCTCCCTTGACATGGAAACAAAGGGTAACAATAGCTTTGGATGTTGCACGAGGGGTGGAATACTTGCATAGTTTAGCTCAACAAAGCTTCATTCATAGAGACTTAAAACCCTCAAATATATTACTTGGTCATGATATGAGAGCAAAAGTTGCGGATTTTGGATTGGTTAAAAATGCACCAGATGGAAAGTATTCTGTTGAGACTCGGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCTGCCACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGTGTAGTTTTGATGGAACTTGTTACCGGTAGAAAGGCATTAGATGATACCGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAACCCCGACGAGGAAACTACGGAGAGCATATATAAAGTGGCTGAACTAGCTGGCCATTGCACTGCTCGTGAACCATATCAAAGACCAGATATGGGTCATGCAGTGAATGTTTTGGTTCCTCTTGTGGAACAATGGAAACCTATTAGTCATGAAGAAGAGGACAGCGCTAGCGGTCACTTTCAGATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCGATGAAGGCACTTCCTCGATATTTAATGATGTATCCATCTCACAAACCCAATTAAGCATCCCCTCTAAACCTGTCGGATTTGCAGACTCCTTCGATTCATTGGATTGCCGGTGA 2727 0.473 MMITTFVADADDAVMSNFLQSLKPTPPGWSQSTPFCQWEGIQCDSSNRVTSISLASKSLTGTLPSDLNSLSQLRSLSLQDNALSGPLPSLAQLSFLQTAYLNRNNFSAVPFAAFAALNSLQTLSLASNPSLSPWTFPTDLTSSTNLIDLDLGTVSLSGALPDIFNKFPSLKSLRLSYNNLTGSLPSSLAISPIVSLWLNNQATGLSGTLSVLSNMTQLSQAWLHKNQFTGSIPDLSQCKGLFDLQLRDNRLTGVVPISLMTLSSLKNVSLDNNELQGPVPAFGKGVKVTLDGINSFCLDTPGDCDPRVMVLLQIAEAFGYPIQLASAWQGNDPCNGWNFVVCSTGKIVTVNFAKQGFRGTISPAFSQLTDLRSLFLNGNNLIGSIPESLTSLPQLQTLDVSDNNLSGEIPKFPSKVKLVTTGNARLGKAPNPGGGASGSTPSGSPPNGSGPESAQGSASLSPGWIGGIVVIVLFFTAVVLFLSWKCYAKRQRRKFRRVNGRENGKGSFKIESINVYNGYGGLPSELQSQSSGDRCDVLAAFEGRNGSISIQILLQVTNNFSEENILGRGGFGVVYRGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLSKVRHRHLVALLGYCVNGNERLLVYEYMPQGTLTQHLFEWQGHGYAPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGHDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELVTGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETTESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPISHEEEDSASGHFQMSLPQALRRWQADEGTSSIFNDVSISQTQLSIPSKPVGFADSFDSLDCR 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01910 908 CDD STKc_IRAK 566 839 - -
Vimu11g01910 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672|GO:0006468
Vimu11g01910 908 SUPERFAMILY L domain-like 24 283 - -
Vimu11g01910 908 SMART serkin_6 560 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01910 908 MobiDBLite consensus disorder prediction 435 456 - -
Vimu11g01910 908 Pfam Leucine rich repeat 364 405 IPR001611 GO:0005515
Vimu11g01910 908 SUPERFAMILY Protein kinase-like (PK-like) 548 854 IPR011009 -
Vimu11g01910 908 ProSiteProfiles Protein kinase domain profile. 560 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01910 908 PANTHER OSJNBA0070M12.3 PROTEIN 6 908 - -
Vimu11g01910 908 Pfam Leucine rich repeat N-terminal domain 310 343 IPR013210 -
Vimu11g01910 908 Pfam Leucine rich repeat N-terminal domain 17 44 IPR013210 -
Vimu11g01910 908 SUPERFAMILY L domain-like 308 414 - -
Vimu11g01910 908 Gene3D Ribonuclease Inhibitor 9 302 IPR032675 -
Vimu11g01910 908 Gene3D Phosphorylase Kinase; domain 1 523 637 - -
Vimu11g01910 908 FunFam Leucine-rich repeat receptor-like kinase 306 429 - -
Vimu11g01910 908 Gene3D Transferase(Phosphotransferase) domain 1 638 861 - -
Vimu11g01910 908 MobiDBLite consensus disorder prediction 424 456 - -
Vimu11g01910 908 FunFam receptor protein kinase TMK1 522 637 - -
Vimu11g01910 908 Gene3D Ribonuclease Inhibitor 306 430 IPR032675 -
Vimu11g01910 908 Pfam Protein tyrosine and serine/threonine kinase 563 833 IPR001245 GO:0004672|GO:0006468
Vimu11g01910 908 ProSitePatterns Protein kinases ATP-binding region signature. 566 588 IPR017441 GO:0005524
Vimu11g01910 908 FunFam Receptor-like kinase TMK4 9 302 - -
Vimu11g01910 908 FunFam receptor protein kinase TMK1 638 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01910 Vimu-Chr11 28733269 28736706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01910 52 860 Receptor kinase-like Gene Family AT1G55610 30.361 3.28e-93 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu11g01910 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01910 K00924 - gmx:100286794 1448.72