Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01904 ATGGAAATCGTTCGTCCTCAGAGTCGCAGGAACTTCTTGTCTTCCTCCTCCGACGCCGTTTCTGTTCCCACAATTCCCCTTTATCGCTCTGCTCCCTCATTCGAAGTTAGACTCGAGGAGTTCGAGTCCTTCGCCATCGACCGCCTCCGAGTTCTCAAGGGCATTTCTGATGGTATGTCGCGAGGGAAAAAACCGGAAGAAATGGAAAATTTGGTAAAGGACCTGTGGAAAGTGAATATGAGACACCAAGACGCTTCTGAAGTTCTGAACAAGGATATTATATCTCATTTTGCTCTACGTCTTGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCCATGGAATCTTCACTCTTTCGGTACCGCTTTCGTCTTCTGAATGCTGAAGCTCAGAGAGCAGTCATGGAAGAATTTGACCTTCCTTACAGGGCCGTTAGCAGTGTGGAATTTGAGAGTATAAAGGAGAAATTGGGACAAGTTGCACGGTCTACGGGTCAACCTTCACCCACTGCTGATGCTATCTTCTACAAGGTACCCTTTGAAGAAGTTCCAGAGCTTGTGGCTGGGCGGAAAGTATTAATTAGTCAAGGATATGCATATGTTGCAATGAATCAGATTGTTTCACTTGTAGCCACACTATTCCGCAGTCAGCTATCAAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAGTCCGAGAACAAGAGAAACATAGGTTAACTCCTATTGTGGAAGCCATGTGCGCAAGTTATTTGGGTCCTGACTATTCTCAGTCAAGAGAATGTGCTGATATATCACTAAAGGACATTGATCAAGTCGCCAAGAGCTCATTTCCTTTATGCATGCGTCACCTATTTGAAAAGCTGAAAGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGCTTGAATCTGGATGATGCACTTGCTTTTTGGAGGGCAGAGTTCTCTAAAAGGGTTGGTTTGGAGAAGTTTGAGAAACAGTACGCATACGGCATACGTCATAATTTTGGAAAGGAAGGGAAGAGAACAGATTATTCTCCCTATTCTTGTACAAAGATCATCTCATCAACTCCTGGAACGGGAGATCATCATGGTTGTCCCTATCGACATTTCAGCGAGGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTAAACAGTAGAGCAATGGAAGATGTGATAGACAAAGCGAGAAATAGACATTACCAGTTGGCTTGCACTTTGACATTTGAAGCTCTTCATGGCATGCCGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGCAGAAAGATATTACAGTCAAAGGCCACTGGCTATGCTATATGCCTTGTGGTTCGATTTGTGATAATCCTTCAGCCTAGAGTATTTTGGTTATTGCAGAAGATTGCTGCGGCGGCTCTTCTCAGGCTTTTAGTTGGTGCCTATACTCGGGGACTGAGAGACAATGTGGTAAAATCTTTATGTATCTTCCAAAGCAGTTCAATGGAAGGAGTTGGAATTCTCTTAGTGTATCATCTTGGAAGTCTGTTTGAAAGAGCTGCACGACTAGATATTCTTTGTAGTATAATTTTTATCTGTGTAGCCAAACCCTTGAATCGCCTGTATGTTAATTTAGGTAGGTGTAAAATGAAAAGTTTTAAGTACAAAAACGTCACCCTTGGGTAG 1716 0.4324 MEIVRPQSRRNFLSSSSDAVSVPTIPLYRSAPSFEVRLEEFESFAIDRLRVLKGISDGMSRGKKPEEMENLVKDLWKVNMRHQDASEVLNKDIISHFALRLVYCRTEDLRKWFLSMESSLFRYRFRLLNAEAQRAVMEEFDLPYRAVSSVEFESIKEKLGQVARSTGQPSPTADAIFYKVPFEEVPELVAGRKVLISQGYAYVAMNQIVSLVATLFRSQLSKTLILTNRKWTSSVREQEKHRLTPIVEAMCASYLGPDYSQSRECADISLKDIDQVAKSSFPLCMRHLFEKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKRVGLEKFEKQYAYGIRHNFGKEGKRTDYSPYSCTKIISSTPGTGDHHGCPYRHFSEENLRAALSRMGVNSRAMEDVIDKARNRHYQLACTLTFEALHGMPCDAGINHPNQYFSDSRKILQSKATGYAICLVVRFVIILQPRVFWLLQKIAAAALLRLLVGAYTRGLRDNVVKSLCIFQSSSMEGVGILLVYHLGSLFERAARLDILCSIIFICVAKPLNRLYVNLGRCKMKSFKYKNVTLG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01904 571 Gene3D - 4 250 - -
Vimu11g01904 571 PANTHER DNA PRIMASE LARGE SUBUNIT 21 452 IPR007238 GO:0006269
Vimu11g01904 571 Pfam Eukaryotic and archaeal DNA primase, large subunit 177 442 IPR007238 GO:0006269
Vimu11g01904 571 FunFam DNA primase large subunit 5 250 - -
Vimu11g01904 571 CDD PriL_PriS_Eukaryotic 27 445 IPR016558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01904 Vimu-Chr11 28484683 28501483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01904 1 453 Core DNA Replication Machinery Family AT1G67320 66.053 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01904 K02685 - gmx:100806321 834.713