Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01890 ATGACACCTGGTTACGAATACGATATTAATTATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCAGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTCAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGACACCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGTTATACAAAGGCTGGGAAAGTTGTTGCAAAATCACTTGCTTGTTTGACAGACGGAGCAACCAAAACGGAATGATTCCAGTGGGAAAAAGGTCCAATGTCAACTAG 453 0.4503 MTPGYEYDINYLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQTPSFQRRSYWMLDPLYKGWESCCKITCLFDRRSNQNGMIPVGKRSNVN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01890 150 SMART CG_1_2 12 119 IPR005559 GO:0003677
Vimu11g01890 150 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 118 - -
Vimu11g01890 150 ProSiteProfiles CG-1 DNA-binding domain profile. 9 138 IPR005559 GO:0003677
Vimu11g01890 150 Pfam CG-1 domain 15 116 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01890 Vimu-Chr11 27442046 27445749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01890 5 119 CAMTA Transcription Factor Family AT1G67310 72.174 6.04e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01890 K21596 - gmx:100786880 245.358