Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01889 ATGGCATTCCCTGTAGTTTTGTTGCTTTTAGCCACTACAGAACCCATCAGTGAGCCCCGTCAGTCAGTGATGGCAATCCCTGTAGTTTTAATGCAAGCCCCATCCTTACTTGATGGCAATCCAGTCCCTGGAGTTTGTCATTGTTCTCCTTTGTCAAAGTCACTCCACTTGAAGTTTCATGGTATTATTCCTCACCCTTCTCCTCTCATAAATCCTCCAAGTCCTAACAAAGTCTTACAAGAATTCCCTAAGAAGTTGCAGGGACCGTCTTCGAGAATTGTGGATGATTCAAGCAGACCTCACGGGATTTGTGCAATGCTGCCTGAGTTCCGGAGTATAATCGTGAGTGTGTGGGGTTGCATTGCTGTAAGAAACAATGGTAGTGGAAAGAAAGTGGTGACTAGGTACCAGTTACGTGAAGAGGATTCTTTTCATGTGGATGATGGGAGGGAGGATAGTTGTTTTGTGACAGGGAATGCCCTGTGTAGGGAAGGGAGACTCAGTTCTGGAGCTGGCGCACAATTGTCACCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCCCTTATTCTAATCAGAATCCAGGGTCAACATCCATACTCGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTCATTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGTCGACTGGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAAATATTTCTCCCTTCTGCAATAAGCATGAAACTGCCCACGATTCAAACCCTCTGGACAATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCTGCTTTCACTGGACGTGATAATCAAGGGCTATTTTATGATGAATATAATGGAAGACAAGGTGATGGAGTTGAATGCTATCATGAACTAATAGACCATGGTTACCCAGATGAAAATGAAGAGGCTTTATGGACAGGGGTGCTGGAATCGTGCAAGTCCTCAACTGCTGTCAAGTTACCTCCGGAAAATGTATACATGGCAGCTGAAAATGAAAATTCAGTATCTTTTTCGAGAAGGGTACAAGTACCAGTTTCCAAACAGGAAGAGAATCACTGGCTCAACTTCAACAGTGATAATTCTCAAAGCTCAGCCGTTTTCTCACCACCTCAAGGGGTTGATGAAGTCAAATTTCCTGCATATTCTTCTGTGGTGGAAACACGAGTAACTAATTCTGGCTACTATGAAACATTGTTTGACCAAAGCCAAATTATAGCACCTCTAGATGCAGATTCAAGCTTGACTATTGCACAAAAACAGAAATTTACCATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACAAAGGTCATCATTGTTGGGTCTTTTCTATGTCATCCATCAGATTCTACCTGGGCATGCATGCTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCTCCTCACTTTCCTAAAAAGGTTACACTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATACCGTGATAAGACTTATAGTTGCACCCAATGTAATCAATCGAAAACAGAAGCTACTAAAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGACAGATGCTTCTTTCTACATCAACAATAAAGAATGACCACATAGAACCCGGAATTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCAGTGGAACATCGACTAGTACTACTGATTGGCTTCTTCAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGAGTTAACATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGTAA 2106 0.425 MAFPVVLLLLATTEPISEPRQSVMAIPVVLMQAPSLLDGNPVPGVCHCSPLSKSLHLKFHGIIPHPSPLINPPSPNKVLQEFPKKLQGPSSRIVDDSSRPHGICAMLPEFRSIIVSVWGCIAVRNNGSGKKVVTRYQLREEDSFHVDDGREDSCFVTGNALCREGRLSSGAGAQLSPSSSSAFSQSPSPYSNQNPGSTSILVDSYEPNQSFSSPGTTEVTSDIFILNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEDSFENISPFCNKHETAHDSNPLDNQRVISNQEQSAAFTGRDNQGLFYDEYNGRQGDGVECYHELIDHGYPDENEEALWTGVLESCKSSTAVKLPPENVYMAAENENSVSFSRRVQVPVSKQEENHWLNFNSDNSQSSAVFSPPQGVDEVKFPAYSSVVETRVTNSGYYETLFDQSQIIAPLDADSSLTIAQKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGDVEVPVQIIHDGVICFEAPPHFPKKVTLCITSGNRESCSEVREFEYRDKTYSCTQCNQSKTEATKSPEELLLLVRLGQMLLSTSTIKNDHIEPGIPLIKQKADDDSWSHIIETLLVGSGTSTSTTDWLLQELLKDKLQQWLSYRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01889 701 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 173 701 - -
Vimu11g01889 701 CDD IPT 459 544 - -
Vimu11g01889 701 Pfam IPT/TIG domain 459 542 IPR002909 -
Vimu11g01889 701 SUPERFAMILY E set domains 459 543 IPR014756 -
Vimu11g01889 701 Gene3D Immunoglobulins 453 547 IPR013783 -
Vimu11g01889 701 Gene3D - 625 701 IPR036770 -
Vimu11g01889 701 SUPERFAMILY Ankyrin repeat 658 700 IPR036770 -
Vimu11g01889 701 MobiDBLite consensus disorder prediction 172 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01889 Vimu-Chr11 27417632 27423080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01889 164 700 CAMTA Transcription Factor Family AT1G67310 39.721 2.78e-102 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01889 K21596 - gmx:100786880 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01889 11 27417632 27423080 Vimu11g01889 11 27417632 27423080 ECH
Vimu6g01490 6 14172727 14185097 Vimu11g01889 11 27417632 27423080 PCT