Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01888 ATGGTTGCTTCACTTGTAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGAAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGATATCTTTCAGAGGTAGCTGTAACAAGCCACCTATCATCACTTACATTGGAAGAGAGTGAGTTATCTAAAAGTACTGCCCAGCTTCAGGCAGATATGACTGTGACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTGTAAGAAATGTAACTCAGGCAGCTGCCCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTGGTGTAGATGGTACGAGTATAGGTGGCTTTGGTAGCATTCCAGAAATTTCTGCTTTGTCAAAACTTGCCTTTCGAAACTCACGCGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTATCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGACAAGGTCGTGCTGCGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCCATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAAAGGCCGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCATCGAATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCTGGTACGAGTGACGAAGCATCATCAACAACTTCTGTGGGGAATGCCTTATTTATGGAGGATGACTTCTATCCATTTCCATAG 951 0.4501 MVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLTLEESELSKSTAQLQADMTVTSVSKENLAANEDQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAREAAAGVDGTSIGGFGSIPEISALSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDIHEDEDEDILKVFRKQKVDVEIEKAVSRVLSMVDSPDARDQYHRMLEKYRQAKAELAGTSDEASSTTSVGNALFMEDDFYPFP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01888 316 Gene3D - 158 207 - -
Vimu11g01888 316 SMART iq_5 181 203 IPR000048 GO:0005515
Vimu11g01888 316 SMART iq_5 102 124 IPR000048 GO:0005515
Vimu11g01888 316 SMART iq_5 158 180 IPR000048 GO:0005515
Vimu11g01888 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 205 IPR027417 -
Vimu11g01888 316 FunFam Calmodulin-binding transcription activator 2 158 206 - -
Vimu11g01888 316 Pfam IQ calmodulin-binding motif 104 122 IPR000048 GO:0005515
Vimu11g01888 316 Pfam IQ calmodulin-binding motif 184 203 IPR000048 GO:0005515
Vimu11g01888 316 Pfam IQ calmodulin-binding motif 161 179 IPR000048 GO:0005515
Vimu11g01888 316 Coils Coil 275 295 - -
Vimu11g01888 316 ProSiteProfiles IQ motif profile. 182 207 IPR000048 GO:0005515
Vimu11g01888 316 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Vimu11g01888 316 ProSiteProfiles IQ motif profile. 159 188 IPR000048 GO:0005515
Vimu11g01888 316 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01888 Vimu-Chr11 27413809 27415280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01888 1 292 CAMTA Transcription Factor Family AT1G67310 70.847 3.71e-121 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01888 K21596 - gmx:100814958 495.738