Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01884 CGGTTCTCTCCTCTCACACAAGCCTACCTGGAATCAGCTAGAGTTGACGCCCACAACCTCTTGGAACTGTTTCTTTTTTACTTGTGTTGGTTACTCTTGTGGATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGCTTGTGTCTGTCCTTTACCTTAACAAGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGGTTTCCAGGTGGTGGTGGGGGTGGAAAGATGTGGCACAAATGGTGGGAGAAGATCTCTGGGCAGGGTTGCAAAATCCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTGAAGAGAGCGTTGTGGAGGAAGCTTTTGCTGACATGGGTGGTGGGTTGGATTATAGTATCTTTGTGGATCTTGTGCTACTTGAGCTTGCAAGGTATTGAGAAGAGGAAAGAAACTCTGGCAAGCTTGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTCAACGTCAGTATGAACCATATCCAAGCCATGTCAATTCTGATCTCCACCTTTCACCATGCCAAGAACCCATCAGCCATCGATCAGAAAACTTTTGCAAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGCGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAGTTTGAAAAGCAACAAGGTTGGACTATCAAGAGGATGGATACTCTAGAGCAGAACCCGGTTCATAAGGATGATTACGCCCCAGAGGCATTGGAGCCATCCCCCGTCCAGGAAGAATATGCTCCTGTCATCTTTGCACAAGATACAATTGCACATGTGATTTCTGTTAATGTGCTCTCTGGAAAGGTAGGTTTCTTATATTTGTCAAATTTTAGGTCTTTATTCCTGGTTGTACGGTTTTTGACTGCTCTACAAGTGATCATTCACTATGTTATTTATTCACCTGTTTGTCAACAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTCAAAACAAATCGTCTGGGGGTTATCCTGACATTTGCCGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGAATTCAAGCAACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTGGTGGAGAAACTGCTTCAGCAACTTGCTAGCAAGCAAACAGTAATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGTTCAAGTGAATCAGGGGATGAGTTCTATCATGTCAGCACTCTTAACTTCGGAGACCCTTTCAGGAAGCACGAGATGCACTGTAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACGTCATTTGGTATTCTTGTTATTGCATTCCTTGTCGGATATATTTTCCATGCCACTGTGAATCATATTGCCAAAGTAGAAGATGATTGCCGTGAGATGATGGAACTTCGGGAACGAGCTGTGGCAGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAAGAAAGTGGAAAGGCTCTGGTGTCACTAATAAACGAGGTTTTGGATCAAGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTTGACATACGGGCAATTTTGGATGATGTTTTGTCGCTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTTCTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACTGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCGATAGAGGTGGACAAAGAATCCAACTCAGAAAATACATTGAGTGGCTCCGTTGTAGCTGATAGTCGCAAGAGCTGGGAAGGATTCAGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTTTCGTCCCTCTCGAATGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGCATTCCACTTGAATCTCAGCCCCGCATCTTCACCCCATTCATGCAGGTAGGTCCATCCATTTCCAGAAAGCATGGAGGAACAGGTATTGGTTTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGAGAAATTGGATTTGTGAGCATACCCAAGGTTGGATCCACATTCACTTTTACTGCCATATTCACCAATGGTATCCGCAGTTCAAACGAGTGTAAAATTCAGCAAACGAACAACCAATCTCGGTCTGCATCATCAGAATTTGAGGGGATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCAAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCTGATTTAAACCAAGGTTTGCTAACCATAAGCAATGGAAATATAGTTATTAATATGGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCACTTTGTCAATAATACAAGGAAAATTGATCATGGGGTTCCCCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTATTGTAAACTTGGGTGCTGATAATCCCACTGTCATTACTAAACCTCTTAGAGCAAGTATGCTTGCTGCCTCACTACAACGATCCATGGGTGTCCAAAACAAGGGAGCTCCCCGAAATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTTTGTGGCAGGAAAATTCTAATAGTAGATGACAATGCTGTGAACCGTGCTGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGACGTGGTTTGTGTTAGCAGTGGGAAAGATGCCATCTCTTCCCTGAAGCCACCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGACGGTTTTGTAGCAACAAAGCAAATTAGGGAGATGGAGCAAAGTGTGAACAGAGAAGCATCAATGGATGAGAATATTAGAAATTGGCATGTACCGATTTTAGCCATGACTGCAGATGTGATACAGGCTACACATGAAAAATGCCTCGGGGGTGGCATGGATGGGTACGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGGTTTTTCCAGTCATCTTGA 3300 0.4291 RFSPLTQAYLESARVDAHNLLELFLFYLCWLLLWMSLLHVVGFGLKVGHLLLVLCCWLVSVLYLNKFISSGIMDTKMGFPGGGGGGKMWHKWWEKISGQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWIIVSLWILCYLSLQGIEKRKETLASLCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKVGFLYLSNFRSLFLVVRFLTALQVIIHYVIYSPVCQQEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSSESGDEFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIAFLVGYIFHATVNHIAKVEDDCREMMELRERAVAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPEFLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKESNSENTLSGSVVADSRKSWEGFRAFSQEGPLGSFSSLSNDLVNLIVSVEDTGEGIPLESQPRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKVGSTFTFTAIFTNGIRSSNECKIQQTNNQSRSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEMVSDLNQGLLTISNGNIVINMVLIEQEVWDRDLGLSSHFVNNTRKIDHGVPPKLFILVNSSSSFKAIVNLGADNPTVITKPLRASMLAASLQRSMGVQNKGAPRNRELQSLSLRHLLCGRKILIVDDNAVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFVATKQIREMEQSVNREASMDENIRNWHVPILAMTADVIQATHEKCLGGGMDGYVSKPFEAEQLYREVSRFFQSS 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01884 1099 Pfam CHASE domain 195 292 IPR006189 -
Vimu11g01884 1099 Pfam CHASE domain 329 428 IPR006189 -
Vimu11g01884 1099 SMART REC_2 965 1092 IPR001789 GO:0000160
Vimu11g01884 1099 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 570 786 IPR036890 -
Vimu11g01884 1099 ProSiteProfiles CHASE domain profile. 192 455 IPR006189 -
Vimu11g01884 1099 FunFam Histidine kinase 4 298 462 - -
Vimu11g01884 1099 PRINTS Bacterial sensor protein C-terminal signature 751 769 IPR004358 GO:0016310|GO:0016772
Vimu11g01884 1099 PRINTS Bacterial sensor protein C-terminal signature 716 730 IPR004358 GO:0016310|GO:0016772
Vimu11g01884 1099 PRINTS Bacterial sensor protein C-terminal signature 734 744 IPR004358 GO:0016310|GO:0016772
Vimu11g01884 1099 SMART HKATPase_4 628 791 IPR003594 -
Vimu11g01884 1099 CDD HisKA 516 577 IPR003661 GO:0000155|GO:0007165
Vimu11g01884 1099 ProSiteProfiles Response regulatory domain profile. 966 1096 IPR001789 GO:0000160
Vimu11g01884 1099 ProSiteProfiles Response regulatory domain profile. 819 940 IPR001789 GO:0000160
Vimu11g01884 1099 Pfam His Kinase A (phospho-acceptor) domain 516 579 IPR003661 GO:0000155|GO:0007165
Vimu11g01884 1099 Pfam Response regulator receiver domain 967 1091 IPR001789 GO:0000160
Vimu11g01884 1099 SMART CHASE_2 192 430 IPR006189 -
Vimu11g01884 1099 CDD PRTases_typeI 910 994 IPR000836 -
Vimu11g01884 1099 Gene3D - 961 1099 - -
Vimu11g01884 1099 CDD REC_hyHK_CKI1_RcsC-like 967 1092 - -
Vimu11g01884 1099 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 628 787 IPR003594 -
Vimu11g01884 1099 SUPERFAMILY CheY-like 964 1096 IPR011006 -
Vimu11g01884 1099 ProSiteProfiles Histidine kinase domain profile. 523 791 IPR005467 -
Vimu11g01884 1099 FunFam Histidine kinase 4 488 579 - -
Vimu11g01884 1099 Gene3D - 580 791 IPR036890 -
Vimu11g01884 1099 SMART HisKA_10 516 581 IPR003661 GO:0000155|GO:0007165
Vimu11g01884 1099 CDD HATPase_EvgS-ArcB-TorS-like 633 789 - -
Vimu11g01884 1099 SUPERFAMILY CheY-like 815 941 IPR011006 -
Vimu11g01884 1099 Gene3D - 144 195 - -
Vimu11g01884 1099 Gene3D CHASE domain 196 462 IPR042240 -
Vimu11g01884 1099 Gene3D - 485 579 - -
Vimu11g01884 1099 PANTHER TWO-COMPONENT HISTIDINE KINASE 132 1089 - -
Vimu11g01884 1099 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 502 582 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01884 Vimu-Chr11 27309164 27315611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01884 35 1098 Miscellaneous Gene Families AT1G27320 65.438 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g01884 HATPase_c 3.3e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01884 K14489 - gmx:100801546 1834.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01884 11 27309164 27315611 Vimu11g01884 11 27309164 27315611 ECH