Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01873 ATGGCGGGGGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACGGTAGAAGAAGCCCAAGAACACGCCGAACTCACTTCCCATTCCAACTTCTCGGAATCCACAGAAGCTGTTCTCAACCTCGTTTGCACCAGTTGCTCCAAACCGTGCAGATCCAAAACTGAGAGTGATCTGCACACTAAAAGAACGGGCCACACTGAGTTTGTTGACAGGACTTCCGAGACCGTGAAACCGATTAGTTTGGAGGTACCGAAGGTGGATGCAATCGCTTCGTTGGAAAACCCTTCCAGCACCGCATCAACTGATCAGAATGAAGAAATGGTTGTTCCTGAAGTGGACAAAAAACTGCTTGAAGAACTCGAATCAATGGGTTTTTCAACGGCACGGGCTACGCGCGCGCTTCATTACTCTGGCAATGCTGGCCTTGAGGCGGCTGTAAACTGGATAGTAGAGCATGAGAATGATCATGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAATTGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCCAAACAACAGGAACTAAGGTATAAAACTAAATTCCGATAA 597 0.4824 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEAVLNLVCTSCSKPCRSKTESDLHTKRTGHTEFVDRTSETVKPISLEVPKVDAIASLENPSSTASTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNAGLEAAVNWIVEHENDHDIDQMPLVPANTKIEAPKPSLTPEELKAKQQELRYKTKFR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01873 198 CDD UBA_PUB_plant 113 161 - -
Vimu11g01873 198 Gene3D - 115 161 - -
Vimu11g01873 198 MobiDBLite consensus disorder prediction 178 198 - -
Vimu11g01873 198 SMART uba_6 115 153 IPR015940 -
Vimu11g01873 198 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Vimu11g01873 198 MobiDBLite consensus disorder prediction 172 198 - -
Vimu11g01873 198 SUPERFAMILY UBA-like 102 167 IPR009060 GO:0005515
Vimu11g01873 198 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Vimu11g01873 198 Pfam UBA/TS-N domain 119 151 IPR015940 -
Vimu11g01873 198 PANTHER F13M7.16 PROTEIN 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01873 Vimu-Chr11 27001301 27003071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01873 98 191 C2H2 Transcription Factor Family AT1G04850 65.957 1.85e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01873 K24348 - gmx:100794687 362.073