Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01862 GCTGACTCAACCTTGCACAGCTCTGTAGTGTTGCACACAGTGATAACTTGTCGAAGAATAAGAAGTGGTGGATACGGAAGTGTTTATTTTGGAGTGTTAGGGAGCAAGGAAGTTGCTGTGAAGAAAATGAGATCCAATAAATTTAAAGAGTTCTATGCAGAACTCAAGGTGGAGCTGTTGGGATATGCAAATGGAGAAGATGACCTCTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTGAAAGGGAACCAACCTCTTTCTTGGTGTGTTAGGGTTCAAATTGCACTGGATGTTGCAAAAGGTCTTCAATATATACATGATTATACAAAAGCACGATATGTGCACTGTGACATAAAGAGTAGCAATATTCTACTTAATGACAAATTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGACAAAACCGATGATGATAATTTTATAGCAACCAGATTTGTAGGAACACCAGGCTACCTTCCACAAGAGTCTCTGAAGGAGCTTCAAGTGACCCCAAAAACTTATGTGTTTGTGTTTGGAGTGGTTAATAAAATATTCCAAGATGATGAACCAGAGATTGCCTTAGAAGATGACATAGATAAGAATCTGGAAGCAAGCTATCGGATGGAAGATGTCTACAAGGTAATAAGATTCATCTATGGTTGTAAAAGTTAG 711 0.3868 ADSTLHSSVVLHTVITCRRIRSGGYGSVYFGVLGSKEVAVKKMRSNKFKEFYAELKVELLGYANGEDDLYLVYEYVPNGSLSDHLHNPLLKGNQPLSWCVRVQIALDVAKGLQYIHDYTKARYVHCDIKSSNILLNDKFRAKVGDFGLAKLVDKTDDDNFIATRFVGTPGYLPQESLKELQVTPKTYVFVFGVVNKIFQDDEPEIALEDDIDKNLEASYRMEDVYKVIRFIYGCKS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01862 236 SUPERFAMILY Protein kinase-like (PK-like) 11 194 IPR011009 -
Vimu11g01862 236 Gene3D Transferase(Phosphotransferase) domain 1 3 224 - -
Vimu11g01862 236 Pfam Protein kinase domain 19 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01862 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu11g01862 236 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 18 194 IPR044812 GO:0019199|GO:0045087
Vimu11g01862 236 ProSiteProfiles Protein kinase domain profile. 14 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01862 236 SMART serkin_6 14 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01862 Vimu-Chr11 26403734 26405281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01862 23 194 Receptor kinase-like Gene Family AT1G51940 56.044 1.14e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu11g01862 Pkinase 8.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01862 - - gmx:100791718 351.288