Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01855 ATGGTGAAGTACTCAAGGGAGCCAAACAATCCCACTAAGTCATGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGGCCTCTCATTATAACCTTTACTATTATAAGCATTCGGTGAACCTCTCTTCCCATTTCCTAGCTGAAGTTTCTGTAAAAGGTTCAGTAAATGATGTAACACAGTGCTATTGTTGCTCCAAGAATGAGTTTTTAATGAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCCTGGTTAAGGCTAAACGGTATTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGGCGTTTCTGCCGTGGTGTTGGAAGGACAGCCCAAGCGAAGAGTAGACACTCTAACGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTCATCCTTGACTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTCTACATTTCCCACATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAGTTGATTTTGTCGGAAAAGGAAGAACCTGTCAGGAAGGAGCCCGAGACAAAGTTGGCGACAAGCAAGAAATCCCAAGCTCTTCGAAGTGTTTATCTCCTCTTCAAGAATCCTAGTCTAACATCTTCAATTCTCTATAAACTCTTCTCTTTTCTTTCTCTACACTCCGACCATGGCAACAGTATCTGCAAACAATTTTTCCCTTACTTGGAAGTTTTAGAAAGGACAAGCATCATCAGTCTATCTGACAATGCGAATGAGACACTTCTCTTAGAAGATGTAACAACTCTGGAAGAACTTCGGGCACCAGAAATAGACTTATCAAAAATCAAGTGGTGTGGAACAAAGAACTACTTGTTATGGGACGAGCCAATCCTTCAAGAACTAGTAAGAGGATTTTGGAAAAATGCTCAAACTGAACTCGACTGCATAAGATCAGTAGTCGTTGGAAAAGAAGTTGCTATTAGTATTAACACCATTGCTGGAGCAATCAACTGCTCCCGGTTTAATGATTGTTTCATGGAGGATTGGGACGAAATCTACGTCTTCAATGGAAAGTCATGGACTCTGGCTGGCCAGAAGGCCAACATGGAAGGGGACCATTACTCTCGCCTCATCTTCAGAATAATTGTCGAGCAAGGAGTTATCAACCATATGTCAACTCCAACAACCTCAATCCTAAATAACATTCTCTCGAATGGTGCTACAAGAAGAGCAAAAGTCTATCTCAGAGGATTAGGAGACCTCAGGAAATGCTCCAGGGCTGAAGGAGAAGCGTCTGAAGAAAAGAAGTTGAAGAGTGACAAGGATGCAAGTCCTGTGCTGGGATAA 1407 0.4328 MVKYSREPNNPTKSCKARGADLRVHFKASHYNLYYYKHSVNLSSHFLAEVSVKGSVNDVTQCYCCSKNEFLMNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETKLATSKKSQALRSVYLLFKNPSLTSSILYKLFSFLSLHSDHGNSICKQFFPYLEVLERTSIISLSDNANETLLLEDVTTLEELRAPEIDLSKIKWCGTKNYLLWDEPILQELVRGFWKNAQTELDCIRSVVVGKEVAISINTIAGAINCSRFNDCFMEDWDEIYVFNGKSWTLAGQKANMEGDHYSRLIFRIIVEQGVINHMSTPTTSILNNILSNGATRRAKVYLRGLGDLRKCSRAEGEASEEKKLKSDKDASPVLG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01855 468 FunFam 60S ribosomal protein L17 50 220 - -
Vimu11g01855 468 PANTHER 60S RIBOSOMAL PROTEIN L17 1 30 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vimu11g01855 468 CDD Ribosomal_L22 73 196 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 ProSitePatterns Ribosomal protein L22 signature. 172 196 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 Pfam Ribosomal protein L22p/L17e 72 197 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 Gene3D Ribosomal protein L22/L17 70 223 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 NCBIfam 50S ribosomal protein L22 73 199 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vimu11g01855 468 MobiDBLite consensus disorder prediction 448 468 - -
Vimu11g01855 468 SUPERFAMILY Ribosomal protein L22 71 199 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 Gene3D Ribosomal protein L22/L17 1 40 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vimu11g01855 468 MobiDBLite consensus disorder prediction 448 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01855 Vimu-Chr11 26175983 26181907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01855 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 69.863 1.33e-102 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01855 K02880 - gmx:100499784 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01855 11 26175983 26181907 Vimu11g01855 11 26175983 26181907 ECH
Vimu6g01518 6 14322896 14324504 Vimu11g01855 11 26175983 26181907 PCT