Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01840 ATGCAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCCAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCGCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCTGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCACTATCTATTGGGTGTCAGGTTCAGGAGATTGTGCACGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGGAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTCCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAGGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAATTCAGTTGCTTTAATTTTAAACCAAATAGTGGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCTATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTAATGGGCACAACAACTGCCCAAAGACCCAGCAGGAACTTTCACATCTTTGTTTAACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTTCTATTCCTGAAGGCCCTCCTGAATCTCTCGACTTTAATTACTGGCAGTTATTATCAGAGTCTGAATCTACAAGTTCAAAAGCTGTAAATAGTGTTAGCTCTTGCAAGTTGAAGGGTGTTGAAGCGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAAGGGAACTGAAAATGTGTCTGCACAAGAGGAAGACATAGAGCAGTGTTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAATAATTGGAGTAAGCAATGTGAAGTGGTAGAACAGTTAAGGTTGCTACTGAGGGATGATGACGAAGCCCGGATATTTATGGGGGCTAATGGGTTTGTCGAAGCACTTGTGCACTTCTTGCAATCAGCTGTGCATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCCGCTGGAGTATTATCATTGTTGGATGAGATGATTTCAAAAACCAGTTCTTATGGTTGCATTACCGCTCTTTATTTGAATCTTTCTTGCCTAGAAGCCGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCTGACTCCGATGTTCAATGCAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTACTATGGCCTCCAATATTCAACACCTCCTTTCATCTGGCATCATTAGTGGCTTACAGTTCCTTCTTGAAGGCGACACTGATTGCTTGTGGACAGAGAGATGCATAGCGGTTTTGATAAATTTAGCTGCTTCTGATGTTGGAAGGGAGGAAATTGAATCAACTCCTGGACTCATTAGTGCACTGGCTTCTATACTGGACACTGATGAGCTCTTGGAACAGGAGCAAGCAGTCACTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTGTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTGCTGATTTGTCTATGCCTCCAGCTGAAATGAAACCGCTATGCAAGTCAATTTCAAGAAGAAAGTCTGGAAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGACCTATTCTGTCTACCAGTGCTGA 2247 0.4201 MQLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCAECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPLSIGCQVQEIVHEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATRLGITSSRAALAERRALKKLLERARSEEDRRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNSGRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSNGHNNCPKTQQELSHLCLTPNYCVKGLVTSWCEQNGVSIPEGPPESLDFNYWQLLSESESTSSKAVNSVSSCKLKGVEAVPLEESGISEESVEKGTENVSAQEEDIEQCFSFLKVLTEGNNWSKQCEVVEQLRLLLRDDDEARIFMGANGFVEALVHFLQSAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLDEMISKTSSYGCITALYLNLSCLEAAKPMIGMSQAIQFLIQLLQSDSDVQCKQDALHALYNLSTMASNIQHLLSSGIISGLQFLLEGDTDCLWTERCIAVLINLAASDVGREEIESTPGLISALASILDTDELLEQEQAVTCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETADLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKTYSVYQC 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01840 748 SUPERFAMILY ARM repeat 144 691 IPR016024 -
Vimu11g01840 748 SUPERFAMILY RING/U-box 264 340 - -
Vimu11g01840 748 Coils Coil 72 92 - -
Vimu11g01840 748 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Vimu11g01840 748 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Vimu11g01840 748 FunFam RING-type E3 ubiquitin transferase 264 338 - -
Vimu11g01840 748 SMART arm_5 439 483 IPR000225 GO:0005515
Vimu11g01840 748 SMART arm_5 523 565 IPR000225 GO:0005515
Vimu11g01840 748 PANTHER U BOX DOMAIN-CONTAINING 6 693 - -
Vimu11g01840 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 339 IPR013083 -
Vimu11g01840 748 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 578 IPR000225 GO:0005515
Vimu11g01840 748 Pfam U-box domain 266 335 IPR003613 GO:0004842|GO:0016567
Vimu11g01840 748 Coils Coil 160 180 - -
Vimu11g01840 748 CDD RING-Ubox_PUB 266 318 IPR045210 -
Vimu11g01840 748 Gene3D - 589 711 IPR011989 -
Vimu11g01840 748 Gene3D - 396 588 IPR011989 -
Vimu11g01840 748 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 496 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01840 Vimu-Chr11 25771463 25774466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01840 2 747 U-box Gene Family AT1G24330 64.567 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01840 - - gmx:100794099 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01840 11 25771463 25774466 Vimu11g01840 11 25771463 25774466 ECH
Vimu6g01525 6 14357482 14361109 Vimu11g01840 11 25771463 25774466 PCT