Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01831 ATGGCGGCTGGGAGACATGGCGGTTACCGCGAAAACGACTTCAGAGAGCGCGAATCGAAACTGGAAGGTTCTAGACGCGGGTATGCCAATTCGAAAGAGGATTACGATCGTAGTAGGAATGGTGGCGGTGATGTTGTGAGGGGAGGGTCCAGGGACAGGGCTAGGGTGAGGCAGAGGGATATTAAGGAGAGAGAGGGTGTTAATGGCGGGTACCGATCATCTTCAAGTAGGAGTGACTCTGGCAGCAGTGGCCTTGGTCCTCGCCGATGTGGTTTCTCTGTCAAAGCAATGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCAATTGAATCAGAATCTAGGGCGAAAGAGTCCGAGGTTTCCATGTTGGAAGAAACAAAAACCCGATCCCCACCGGTGCCGGAGAGGAAAAGAAAATTCTCGCCCATAGTGTGGGATCAGGATGACAAAGATGTCAGTGAGTCATCCGGAGTTAGGGTTTCTGCCTCTACAGTGGTGACAGCAGCTCTTCCTCCTCCGCCTCCATTGCCAAAGGTATTCCATCAGTCACAGTCCCCAAATGCTCCAAATGGTGTTGTACAAATACATCCTGTCAAGAACAAGGAGACCGAGGATCCCCAGTTGAATGCAGCATCTAAGATTACCTTGCCCTCTCCTTCAGGTTTGCATTCATCACCTCCGAAAGGGAGGTGGGGTAATGATCAGGAAGCTGATCATCTAGAAGGTGAAGTTTATGTTCCAGCTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAGATCCTCAATGATGAGGAGATGCCCAAACGAAGGAGGAAGGTGTCTCCTGAGTTCTTGGATGGCAGACTAAGGAACAAGTTATTGAGCCCTGTGGAATCCAAGATTGAAGGTATTGAAGGAGCTAGAGCCAGATCATCTGAATCTGAAGAAAGAGGTGTCCGTGGGAGAACTTCCAGCAGTGATGATCATCCTGGTATGGAGTCAGAGAAGGATGACTTCATGGATGTTGACCCTCAGGGTGGGAAAAGTGAAACCAGTGTCAGTCACTCGGAAACGGAATATGAAGATGAAGACGATGGTAGGGAGACTCCAGAACCTCCTTCTCCACCTCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGGGATAAAAAGACTGGAGAAATTGTAGCACTGAAGAAGGTCAAGATGGAGAAGGAAAAGGAGGGCTTCCCACTGACTTCTCTTAGGGAAATAAATATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTCATGGAATATATGGAGCATGACCTTAAAGGACTAATGGAAGCAATGAAGCAACCTTTCAGCCAGAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAATTGGGTGCTTCATAGGGATTTAAAGACTTCAAATCTGCTTTTAAATAATAGGGGTGAGCTCAAAATTTGTGATTTTGGCTTGGCCCGTCAGTATGGGAGTCCTTTAAAGCCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTCCTTCTGGGGTCAAAACAGTATTCAACAGCCATAGACATGTGGTCTCTAGGCTGTATAATGGCTGAGCTATTATCTAAGGAACCACTGTTTAATGGGAGAACGGAGTTTGACCAACTTGACAAAATTTTTCGGATTCTAGGCACCCCTAATGAAGCAATATGGCCTGGTTTCTCAAAATTACCTGGAGTAAAGGCTTCCAGCTTTGGGTGGTTCTGGTCTGACTATCTGGCCTCCCTTGGTGACTTGACTGTTGAACAACTTTTCTATTTTGTATTAACAGTCGGAATGTTCATTTCAGGATTTGATTTGTTGAACAAACTTCTAACATATGACCCTGAAAAGGTAAAGCGGATCACTGCTGAAGCTGCTCTAAATCATGAGTGGTTCCGCGAGGTCCCTCTTCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACACGCTCAGGACAGGCGTGTACGGAGAATATACAAGAGTCCAGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCGGGGACTGGTGGAATTTTCGGCTAA 2262 0.4624 MAAGRHGGYRENDFRERESKLEGSRRGYANSKEDYDRSRNGGGDVVRGGSRDRARVRQRDIKEREGVNGGYRSSSSRSDSGSSGLGPRRCGFSVKAMDREPGELSSESGSDDAIESESRAKESEVSMLEETKTRSPPVPERKRKFSPIVWDQDDKDVSESSGVRVSASTVVTAALPPPPPLPKVFHQSQSPNAPNGVVQIHPVKNKETEDPQLNAASKITLPSPSGLHSSPPKGRWGNDQEADHLEGEVYVPARNISSSRWAAGDNSPGDEGEILNDEEMPKRRRKVSPEFLDGRLRNKLLSPVESKIEGIEGARARSSESEERGVRGRTSSSDDHPGMESEKDDFMDVDPQGGKSETSVSHSETEYEDEDDGRETPEPPSPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLDKIFRILGTPNEAIWPGFSKLPGVKASSFGWFWSDYLASLGDLTVEQLFYFVLTVGMFISGFDLLNKLLTYDPEKVKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRVRRIYKSPDPLEEQRRKELQQGESGTGGIFG 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01831 753 FunFam Cyclin-dependent kinase G-2 482 729 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 275 293 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 8 67 - -
Vimu11g01831 753 CDD STKc_CDC2L1 393 698 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vimu11g01831 753 SMART serkin_6 399 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01831 753 MobiDBLite consensus disorder prediction 69 83 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 310 351 - -
Vimu11g01831 753 SUPERFAMILY Protein kinase-like (PK-like) 391 704 IPR011009 -
Vimu11g01831 753 PANTHER CELL DIVISION PROTEIN KINASE 397 704 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 732 753 - -
Vimu11g01831 753 Gene3D Transferase(Phosphotransferase) domain 1 482 729 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 210 227 - -
Vimu11g01831 753 MobiDBLite consensus disorder prediction 1 388 - -
Vimu11g01831 753 Gene3D Phosphorylase Kinase; domain 1 384 481 - -
Vimu11g01831 753 ProSiteProfiles Protein kinase domain profile. 399 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01831 753 FunFam cyclin-dependent kinase G-2 isoform X1 384 481 - -
Vimu11g01831 753 Pfam Protein kinase domain 399 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01831 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Vimu11g01831 753 MobiDBLite consensus disorder prediction 93 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01831 Vimu-Chr11 25520977 25528209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01831 390 743 Core Cell Cycle Gene Families AT5G10270 43.784 1.27e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vimu11g01831 Pkinase 4.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01831 K08818 - gmx:100792524 1191.41