LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g01825	ATGGAGTCGGATTCTGATTCCGACGGGTCTCACATCTCTGCAACTCCTCCGAGAAATTTAAGTTTGTCACCACCGCGGCCGCTACCACCACCTCTCGTGGTTTCAAACAAATCCCGAATCAGAATTAAACCCTCAATATCAAAACCAGCTCCTTCTGGATCCTCCAAAGCCCCGTCGAAACCCGACCCGGTCCTGGAAACCCCTCTCTCCCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGACGCGCCGTCAGTTTCCTCCTCCATCGAAACCCTCCCTGCTGGTTTCTTCTCCTCCTCCCACTCTGCTTCGTTCGTGAAGATTCGAAGACCGCTTATTAACCTAGAACCTTCTGGAATCGAACCAGTTCTTACTCCCACCGCGTCTGATTCACGCGCTGATAGCACCGATGCGAGGACACGCAGAAAGACGCGGCTTCCCAACCTGATAGGTGCCAGTGCACCTATGCCTACCGTGAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTAAACTTGAGTGGCAAGCGAAGGAAGTTCTTGAACAAGAAGGGAAAATCCAACGGAAAAAGATACAAGAGAGGGAAATTCATATCGAGGCACGAAAGGGAGGGGAAAGAGAAGGATATTGAAGAGTTGAAGCAGAGAGGGGATTGTAAGATTCTTGAGATTGATTGCGCTGTAGTGGAAGAGGCTGTAGCTGCGACGCTAGATGAGCCTTCGGAGGAGAATTTGGTGAAGATTTTGAAATTAGTTTATGGTTATGATTGTTTCCGAGACGGGCAGGTTGAGGCAATTCAGATGGTTCTTGCTGGGAAGTCAGGAGCGGTTGTTTTGCCGACCGGTGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAATTGCCTTATGTGATTAAGGGTGGTCTTCTATCTAGTACTCAGACACCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGAGATAAAGTTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGGGTTTCTGTCTATCATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGCGACTTAGAGCATCTTTGCTTCGTAAGACACTTAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATCCCTCACTCAAATCTTATTCAGAAGGCGCATTTTAGGGACAATTTTCATTTATCAGTGTCTATGGTCAGAAACAGGCAAGTTATACGCTTCTACATAGTGCTTGAGCTTGTATACTTTCATTGTGTGAACTTTGTTAAACTTATGTTTGAATTCTTTGAACATATTAGAATGAAAGATCTACTGATTTTGATAAGGTCTCCTCCTTTTGCGGAAGTTCAGAGCATCATCATATACTGCAAATTTCAGTATGAAACAGATCAAATTAGCAGATATTTGAATGATCACAGTATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTGGCCACGGTGGCCTTTGGCATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACGTTTTTCAAACTTCGTAGTCTTATGTACAGTGAAGGAGTAGACGAATATGCTGTGAACAAATTTCTGCGTGAAGTCTTTCCTTCTGATAAAAGCTCCTGTGGGAAAATATGCTCATTAATCAAAGAATCTGCTTCACGCAGGCTTGATATGAAGGAAGAGGTGATGCTTACTCTTTTGACACGCTTGGAGTTGGGCAATGTGCAGTACCTGCAGTTACTTCCACAGATCAATGCAACTTGCACTTTGGCTTTCCATAAGACTACTCCCCCATTACTTGCCCAAAAAGTATCTGCTATAGCTGCAATTCTGAAAAGATCTGAAAGTAAGCGTGGGCAATATATTTTTGACATCCCTACTGTGGCAAATGACATGGGGGTTACAGCAGTTAAATTAACAAATCAGTTGACCGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCAGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTTAGTGCTGTATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGGACCAATCACACACCATGCTTGCAAAGGAAAATATTGGAGTATTTTTCTGGAGTTGAAAATGCTGATTTCTGCAAGAAAATTGATGGCCAAAGCAGTCCTTTCCTGCGAGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCCGATTTACACCAAGAGCTGTTGCGAGAATAATGCATGGAATTGCAAGCCCCGCGTATCCTTCAACAACATGGAGTAAAACTCACTTCTGGGGAAGGTATACTCGAGTAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAACATTTGGTCGGAAAATGTACGCTCTAA	2802	0.4393	MESDSDSDGSHISATPPRNLSLSPPRPLPPPLVVSNKSRIRIKPSISKPAPSGSSKAPSKPDPVLETPLSLPTDLPFQIRRPSDAPSVSSSIETLPAGFFSSSHSASFVKIRRPLINLEPSGIEPVLTPTASDSRADSTDARTRRKTRLPNLIGASAPMPTVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKSNGKRYKRGKFISRHEREGKEKDIEELKQRGDCKILEIDCAVVEEAVAATLDEPSEENLVKILKLVYGYDCFRDGQVEAIQMVLAGKSGAVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPYVIKGGLLSSTQTPEEASESLMQLRQGEIKLLFVSPERFLNEGFLSIISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDAIMSALDIPHSNLIQKAHFRDNFHLSVSMVRNRQVIRFYIVLELVYFHCVNFVKLMFEFFEHIRMKDLLILIRSPPFAEVQSIIIYCKFQYETDQISRYLNDHSILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVNKFLREVFPSDKSSCGKICSLIKESASRRLDMKEEVMLTLLTRLELGNVQYLQLLPQINATCTLAFHKTTPPLLAQKVSAIAAILKRSESKRGQYIFDIPTVANDMGVTAVKLTNQLTDLKLMGEITYEMKDMAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVQKMDAMFSAVYFALNLCDKMQGCSGTNHTPCLQRKILEYFSGVENADFCKKIDGQSSPFLRADIKVFLQSNSQARFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTRVDFKVVMEAAKEELKHLVGKCTL	933

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g01825	933	Pfam	Helicase conserved C-terminal domain	511	604	IPR001650	-
	Vimu11g01825	933	Gene3D	-	234	442	IPR027417	-
	Vimu11g01825	933	FunFam	ATP-dependent DNA helicase Q-like 5	450	672	-	-
	Vimu11g01825	933	SMART	ultradead3	260	453	IPR014001	-
	Vimu11g01825	933	NCBIfam	RecQ family ATP-dependent DNA helicase	253	633	IPR004589	GO:0004386\|GO:0006310
	Vimu11g01825	933	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	494	644	IPR001650	-
	Vimu11g01825	933	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	272	442	IPR014001	-
	Vimu11g01825	933	FunFam	ATP-dependent DNA helicase Q4	232	442	-	-
	Vimu11g01825	933	MobiDBLite	consensus disorder prediction	1	91	-	-
	Vimu11g01825	933	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	304	623	IPR027417	-
	Vimu11g01825	933	Pfam	DEAD/DEAH box helicase	266	428	IPR011545	GO:0003676\|GO:0005524
	Vimu11g01825	933	SMART	helicmild6	524	605	IPR001650	-
	Vimu11g01825	933	CDD	SF2_C_RecQ	496	614	-	-
	Vimu11g01825	933	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	379	388	IPR002464	-
	Vimu11g01825	933	Gene3D	-	493	672	IPR027417	-
	Vimu11g01825	933	CDD	DEXHc_RecQ4-like	252	445	-	-
	Vimu11g01825	933	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	243	799	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g01825	Vimu-Chr11	25334125	25343030	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g01825	514	637	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.746	4.71e-14	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g01825	K10730		-	gmx:100811214	1410.97