Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01812 ATGGGTTTACCTTCTCTCCTTCTTGTTTTAACTCCTCTGCTGACATCATTTGCTGTTTGCCAACATGAAGAGTTTGTGAGCATTGATTGTGGTGGATCAAACAATTACACTGATAACAGCACGGGTTTGGCATGGATCTCAGACTCTGGGATCATGGAACATGGCATTTCAGTGGAAGTGCAAAGTCCAAATGGAAGCATGGTGCAATATCAAAAGAGGAGAGAGTTTCCCATAGACACCAAGAAGTACTGTTACACGCTGAGCACAGAGGAGAGAAGAAGGTACTTGGTGAGAGCAACTTTTCATTATGGAAGCTTGGAGAGTGGGGACACTTACCCTCAGTTTCAGCTCTACTTGGATGCAACCAAGTGGGCTACTGTGTCAGTATATGATGCCTCAAGAATATATGTTAAGGAAATGATAATCAGGGCACCCTCAAATTCTATTGATGTATGTGTGTGCTGTGCTACTACTGGTTCTCCCTTCATTTCCACTCTTGAGTTGCGACCCTTCAATCTTTCAATGTATGCCACGGATTTTGAAGACAGTTTCTTCTTAGAAGTTGCTGCAAGAATAAATTTTGGCGCACCAACTGAAGATGCTGTCAGGTACCCGGATGATCCATATGATAGAATTTGGGATTCTGATCTAATTAGAAGGCAAAATTATCTTGTTGGGGTAGCCCCAGGCACAGAAAGGATTGGCACTACAAAAAACATAGATGTAGAGACAAGAGAATACCCACCTGTTAAAGTAATGCAAACTGCAGTAGTTGGCAGAAAAGGAGTGCTCAGCTACAGATTGAACCTGGAAGACTTCCCTGCGAATGCTCGAGCTTATGCATATTTTGCAGAGATTGAAGATTTGGACAAGAATGAGAGTCGAAAATTCAAATTAAAGCAACCTTATATAGCTGACTATAGCAATGCAGTGGTCAACATTGCTGAGAATGCCAATGGGAGCTACACTTTATATGAACCAAGTTATATGAATGTTACTCTAGAATTTGTTTTATCATTCTCCTTTGTTATGACCCCAGATTCTACCCGCGGACCTCTTCTGAATGCACTGGAAATAAGCAAATATGTAGAGATTGCTTCAAAGACAGACAAACAAGACTCCACCGTTGTAAATGCATTTCGGTTATTGTCTGCTGAAAGTTCCCAGACAAATGAAGGTGATCCTTGTGTTCCAACTCCTTGGGAATGGGTGAATTGTAGTACCACCACACCGCCAAGAATAACAAAAATAATTCTTTCAAGAAGGAATGTGAAAGGTGAAATCCCACCTGAGCTTGGCAACATGGAAGCACTGACAGAGCTGTGGTTAGATGGAAACCTGCTTACTGGACCATTACCTGACATGAGCAAACTGATAAATCTAAAGATTGTGCACTTAGAGAACAACAAGTTGTCTGGTCGATTATCGTCTTACCTTGGTAGTTTGCCAAGCTTACAAGCACTGTTCATACAGAACAACTCATTTAGTGGGGAAATACCGGCTGGATTAGTGTCTGAAAAAATTGTTTTCAGCTTTGAAGGTAATCCTGGACTATACAGAGGGAACAAGAAGCATTTTAAGATGGTGGTGGGAATTTCAATTGGAGTACTAGTGATCCTGTTAATATTTTTCTTGGTAAGTTTGGTGCTTTTGCTCAATACGCGGAGAAAGGCATCTCAAAAGAATCGTGAGGAAAAAGGAATTTCTGGACGCACTAACAGTAGACCTTTAACTGGATACTCATTTCTTCGGGGTGGAAGTTTGATGGATGAAAACACTACTTGCCATATTACACTCTCAGAGTTGAAAGAAGCTACTGACAATTTTTCAGAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTACTATGGGAAAATGAGAGATGGAAAAGAAATTGCAGTTAAGAGCATGAGTGAATCGTCCTGCCATGGGAACCAGCAATTTGTTAACGAGGTAGAGTACTATGCAAGCCAGCAATTGACAGAAAAGAGTGACGTATACAGTTTTGGAGTTGTTCTGCTGGAATTGATATCTGGAAAGAAACCTGTGTCATCTGAAGATTACGGTGCTGAAATGAACATTGTTCAATGGGCTAGATCATTAACTCGTAAAGGAGATGCAATGAGCATCATTGATCCTTCTTTGAATGGGAATGCTAAAACTGAGTCCATTTGGAGGGTGGTTGAAATAGCCATGCAATGTGTGGAACATCATGGTGCCTCAAGGCCAAGGATGCAAGAAATCATTTTGGCTATACAAGATGCTATCAAGATAGAACAAGGAATAGAAAATAAGCTAAAATTATCATCATCATCATCATTTTCAGGTAGCAGCACTTCAAAGCCACACTCTTCACGCAAGACTTTACTCACAAACTTTCTTGAAATTCAGAGCCCTGACGTTTCAAATGGTTGCCTCCCATCAGCAAGATAA 2433 0.4081 MGLPSLLLVLTPLLTSFAVCQHEEFVSIDCGGSNNYTDNSTGLAWISDSGIMEHGISVEVQSPNGSMVQYQKRREFPIDTKKYCYTLSTEERRRYLVRATFHYGSLESGDTYPQFQLYLDATKWATVSVYDASRIYVKEMIIRAPSNSIDVCVCCATTGSPFISTLELRPFNLSMYATDFEDSFFLEVAARINFGAPTEDAVRYPDDPYDRIWDSDLIRRQNYLVGVAPGTERIGTTKNIDVETREYPPVKVMQTAVVGRKGVLSYRLNLEDFPANARAYAYFAEIEDLDKNESRKFKLKQPYIADYSNAVVNIAENANGSYTLYEPSYMNVTLEFVLSFSFVMTPDSTRGPLLNALEISKYVEIASKTDKQDSTVVNAFRLLSAESSQTNEGDPCVPTPWEWVNCSTTTPPRITKIILSRRNVKGEIPPELGNMEALTELWLDGNLLTGPLPDMSKLINLKIVHLENNKLSGRLSSYLGSLPSLQALFIQNNSFSGEIPAGLVSEKIVFSFEGNPGLYRGNKKHFKMVVGISIGVLVILLIFFLVSLVLLLNTRRKASQKNREEKGISGRTNSRPLTGYSFLRGGSLMDENTTCHITLSELKEATDNFSEKIGKGSFGSVYYGKMRDGKEIAVKSMSESSCHGNQQFVNEVEYYASQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGAEMNIVQWARSLTRKGDAMSIIDPSLNGNAKTESIWRVVEIAMQCVEHHGASRPRMQEIILAIQDAIKIEQGIENKLKLSSSSSFSGSSTSKPHSSRKTLLTNFLEIQSPDVSNGCLPSAR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01812 810 PANTHER OS07G0107800 PROTEIN-RELATED 653 756 - -
Vimu11g01812 810 SUPERFAMILY Protein kinase-like (PK-like) 653 757 IPR011009 -
Vimu11g01812 810 SUPERFAMILY Protein kinase-like (PK-like) 594 654 IPR011009 -
Vimu11g01812 810 SUPERFAMILY L domain-like 397 504 - -
Vimu11g01812 810 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Vimu11g01812 810 Gene3D Phosphorylase Kinase; domain 1 587 657 - -
Vimu11g01812 810 Gene3D Transferase(Phosphotransferase) domain 1 658 782 - -
Vimu11g01812 810 Pfam Malectin-like domain 28 361 IPR024788 -
Vimu11g01812 810 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 408 499 - -
Vimu11g01812 810 Gene3D Ribonuclease Inhibitor 368 515 IPR032675 -
Vimu11g01812 810 Pfam Protein tyrosine and serine/threonine kinase 653 749 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01812 Vimu-Chr11 24970782 24975429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01812 653 810 Receptor kinase-like Gene Family AT1G67720 66.667 6.30e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu11g01812 Malectin_like 6.1e-88 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01812 - - vum:124840153 1221.07