Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01811 ATGACTCTTCTCTCCAACAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTAGGGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCAGTCATTATGATGTCTGTTGATGGAGAAACCAGTAGAGTAATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGAGCAGTCCGACGATTGTAACATCTTTGCCATAGAAGAAATTACCTCGATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGGAATTGTCTTTAAGATACTGTTTAGTGGAGGGGAAAAATAATGAAGAGTGGAGGAATTTTGATAAAATTTCCATGTTTGGTTCAGAGGTTTGGAGGGGTGGGGAACGAAAATATGGGGCCAAAATCTCTCCTCAACAACCCTTTCTGACCCTACAAAGTTTAGAGGACTTTATTTTCCCTCCTCTTCCTTCTCCTTCTCTGAACCAAACAGGTTCCTTGATGAGAAAAAAATTTATCCTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCGTCAAGTGGAATAAAGCATTCGGATTCACCGTCAAAAGATCCAGGAAGTTTTAGTTTTCCAAACACTGCAAGCAACAAGCAACAAAGTGATGTTGTCATTGACAGCTTCAGTCCTTCAGATGGAAGTTTACTACAGATGGATGCTCCAAGTCATGAAGGTGACCTCAAGAGAATCTTGTCAGAGCCTACAACCGAAAAAAGAAGAGCTTCACCAAAAAGTTCACAGACGAGCCTCAATCAACCCTTTTCATCTGTAGAATCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGACCACTCAAAGAAGAACAGAAGACAACTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACACGGTACACGGCATCACATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAACCTTTATATGCTGGTTACAAGAGTGATTATGTGAGCCCTGTGAGTTCAATGGGAACTGCAGTTGACACCTTTCCTAACCAGTCCAAAAGCCTCATCCTGAATGATCAATCTCCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATGTTGATTGCATTTCTGATCTGGATTTTTACCAAAGGAGTCTATTATTGTGTGGTGATGCAGCTTCTGCACCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAACATAGATATATCAGAATGTTATGATCCGAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCCGTAGACCAAAGTCTATTCATAGCATGA 1980 0.4106 MTLLSNSMDNGCFSSPRHEAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLLMNGSEQSDDCNIFAIEEITSIKKRKDADSKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQELSLRYCLVEGKNNEEWRNFDKISMFGSEVWRGGERKYGAKISPQQPFLTLQSLEDFIFPPLPSPSLNQTGSLMRKKFILQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSFPNTASNKQQSDVVIDSFSPSDGSLLQMDAPSHEGDLKRILSEPTTEKRRASPKSSQTSLNQPFSSVESSEASHAIFDCTIQTQYSWGEFPKGPLKEEQKTTVQLEDSFSQLPLHGTRHHIQVDQSQSIASINSNPSITEEEVAPSLDTKPLYAGYKSDYVSPVSSMGTAVDTFPNQSKSLILNDQSPEPIFTSNLGLKTDGFDVDCISDLDFYQRSLLLCGDAASAPLEEDLNFFLLQTEWYNMNFGQQNIDISECYDPRLVAEAPGYFYDSADYSSVDQSLFIA 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01811 659 Gene3D - 25 198 - -
Vimu11g01811 659 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Vimu11g01811 659 MobiDBLite consensus disorder prediction 424 440 - -
Vimu11g01811 659 MobiDBLite consensus disorder prediction 348 399 - -
Vimu11g01811 659 SMART REC_2 25 137 IPR001789 GO:0000160
Vimu11g01811 659 CDD REC_typeB_ARR-like 27 141 - -
Vimu11g01811 659 Gene3D - 204 263 - -
Vimu11g01811 659 FunFam Two-component response regulator 203 263 - -
Vimu11g01811 659 SUPERFAMILY Homeodomain-like 205 260 IPR009057 -
Vimu11g01811 659 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vimu11g01811 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 350 IPR045279 GO:0009736
Vimu11g01811 659 MobiDBLite consensus disorder prediction 405 423 - -
Vimu11g01811 659 SUPERFAMILY CheY-like 24 153 IPR011006 -
Vimu11g01811 659 MobiDBLite consensus disorder prediction 347 440 - -
Vimu11g01811 659 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01811 Vimu-Chr11 24922920 24927132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01811 19 272 Response Regulator Gene Family AT2G25180 53.307 4.28e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu11g01811 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01811 K14491 - mof:131144679 529.25