Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01808 ATGGAAAAAATGAAGTTAATATCGAGAGAAACCATCAAACCCTCCACACCAACTCCTCCACACCTAAAAATATACCCACTCTGCTTCATCGACCACATCGTTTTCCGCAACTACATCCCAATACTTCTGTTCTACTCTGCAAACCACCATTCCAAGAACCACCAAGCTTCCAAAATCTCAACCCTCAAGAAATCCTTATCGCATCTTCTGTCACGATACTACCCCTTCGCGGGGAAGCTCAGAGACCAACTTTCCATCGAATGCAACGACCAAGGTGTGTCCTTTCTCGTTACAACCTTCACATGCAACCTTTCATCGGTCCTCCACAATCCCAAGCATGAAACCTTCGACCCTCTGTTCCCAGATCAACTACAGTGGAACCCCATGGAAACAGCTTCTTCAGCCATTGTAGCCATTCAGATAAACTGTTTTGCATGCGGAGGAATCGCCATAAGCGTCTGCATGTGTCACAAAGTTGCCGACGCCGCCACACTCTGCAACTTCATCAATGACTGGGCCACTTTCAGCCGCCATAACCAAAACCAAGAAGAAGAACAAGCAGAGTTGCTGTCATCATTACCCTTCCCTGTTCCCGGGGCTTCATTTTTCCCGCAAGAAGACTTGCCTGTTTTTCCGGAAGTTGCCTTCGTGAAAAACGACACCGTTTGCCGAAGGTTTGTGTTCGAGGCTGCTAAGATCGACTCGCTCAAAGCCATGGTGTCCTCCTCCGGCAACGTGCACAACCCCACGCGCGTGGAAGTTGTGAGCGCTTTGATCTACAAGCGCGCGGTTTCATCGCTAGGGTTGACTTTCAAAACGACGGCGTTCCGAACCGCCGTGAACCTCCGCAATAGAACGGTTCCTCCCCTTCCTGGAAAAAGCTTGGGGAATCTGGTTTGGTTCCTCTTCGTGTCCAACCTGGGGGAAGAGGCGGAGCTGCAGGAGTTGGTGGTGAAAATGAGAGAAGGGTTGAGCGAGTTCTGTGAGACGTGTGGGAAGAAGTTTGGAGGGAAGAAGAAGGACTCGAGGTTCATCACGGAGTGTCTGAAGCAGGCTACTAGGGTTCCGGAGGGTGGGAGTTTGGTGTGTTGCGCGAGTTGGTGCAGGTTTCCGATGTACGAAGCCGATTTTGGGTGGGGGAAACCGTCGTGGGTCACCACTAGCGAGTGTCCGGTGAAGAATAGCGTTGTTTTGATGGATACGATAGACGGTGAAGGGATTGAAGCGCTTGTAAACATGGAGGAACATGACATGGCCAAGTTAGAGCGTGATTTCCACCTTCTTCAATATGCTTCTCTTAATCCATTAGTTCAACATGGTAGCTAA 1326 0.4992 MEKMKLISRETIKPSTPTPPHLKIYPLCFIDHIVFRNYIPILLFYSANHHSKNHQASKISTLKKSLSHLLSRYYPFAGKLRDQLSIECNDQGVSFLVTTFTCNLSSVLHNPKHETFDPLFPDQLQWNPMETASSAIVAIQINCFACGGIAISVCMCHKVADAATLCNFINDWATFSRHNQNQEEEQAELLSSLPFPVPGASFFPQEDLPVFPEVAFVKNDTVCRRFVFEAAKIDSLKAMVSSSGNVHNPTRVEVVSALIYKRAVSSLGLTFKTTAFRTAVNLRNRTVPPLPGKSLGNLVWFLFVSNLGEEAELQELVVKMREGLSEFCETCGKKFGGKKKDSRFITECLKQATRVPEGGSLVCCASWCRFPMYEADFGWGKPSWVTTSECPVKNSVVLMDTIDGEGIEALVNMEEHDMAKLERDFHLLQYASLNPLVQHGS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01808 441 Gene3D - 219 432 IPR023213 -
Vimu11g01808 441 PANTHER F21J9.9 5 432 - -
Vimu11g01808 441 Pfam Transferase family 4 427 - -
Vimu11g01808 441 Gene3D - 2 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01808 Vimu-Chr11 24900401 24902610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01808 4 423 Monolignol Biosynthesis Gene Families AT5G48930 24.670 1.15e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01808 - - pvu:PHAVU_002G177000g 749.584