Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01796 ATGAAGGGTAGGAGTAGAATAAATGCTTTTTGTAGTGAGACTGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTGAGTTGGATTATAGCATCCACAGAGAAATCCTTATGGGTGTTATCTAGATTTGATGTTACTATGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATACCAAATTATCCAAGCTTACCGCCTCAGCTTATTTGTCAACTTCATAACGTGACTATGCATGCAGATAATGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCGGAGTTAGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCTAAAAGGCATCTACTCACCACTGGATGGAGTGTCTTTGTCAGTGCTAAAAGGCTTATTGCTGGTGATTCAGTTCTGTTTATCTGTTTCCCGTTCTATATACTTCCAACAAAGATGGGTAGTTCCACCTTTCTTGTCCAAGAACTTGCTTCTGCTTCAAAGCATTTTGATCCACTTCCCTCAATGCTATTTTGTCTTGTTCAGTCAAATGTGGATCGTCCTCTTCACTCAAAGCAATGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCTAGTGATAGTATGCACTTAGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCGACTAGCAGCCGATTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTTATACCTTTAGCAAAGTATGTTAAAGCTGTATATCATACTCGTGTGTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTATTCGTCGATACATGGGCACAATAACTGGCATTAGTGACCTGGACTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAAAGGCAACCCCGGGTTTCTTTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCACCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCCATGGCTTGAAAGATGACGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTATTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAATTATCAAACAGACGTATACCAAGCTATGGCTGCCGCTGCACTTCAGGATATGTGGAGTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTCCAATTTCAGCAACCACAGAACTTCCTTAATAGGACTTCTTCCTCAGTGCAGACTCAGATCTTGCAGCAATCTCAATCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAGACTCTAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCACCATCTTCTACAGCAGCAACAACAGCAGCAACAATCACAACAACCACAACAGCAACAACAGCAACTGCAGCAGCAACAAGTGGTTGATCATCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCCCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTAACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCATGGGTTCCTGTTCAATCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCCTTCTGGGGCATCTCAATGTGTTCTGCCTCAACTGGAACAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCAGTGATCCGCAAAATCATCTTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTTTACCTTTCCAATCATCTAATTACCTGAATACCACAAGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGAATCAGGTTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTTGGAAGATCATTGGATATTACAAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAACTTCTTAACTCAGTCCCAATCCAGAGGCTCTCTAATGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2964 0.4457 MKGRSRINAFCSETGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVSWIIASTEKSLWVLSRFDVTMVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADNETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFICFPFYILPTKMGSSTFLVQELASASKHFDPLPSMLFCLVQSNVDRPLHSKQWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATSSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSIRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFHGLKDDDFGLNSSLMWLRDTDRGIPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWSSDPSKQHPTSLLQFQQPQNFLNRTSSSVQTQILQQSQSQQSFPNSQEIPHPSQSQAQTLTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQQQLQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPQDETSHLLNLPRTSWVPVQSSTAWPPSKRVAVDPLLPSGASQCVLPQLEQLGQPQSTMAQNAITLPPFPSRECAIEGSSDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTLPFQSSNYLNTTSTDSSMNPGMTHNIGESGFLQTPENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGVCDDYAGHEDPRSISTGITTVGSLNY 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01796 987 ProSiteProfiles B3 DNA-binding domain profile. 149 260 IPR003340 GO:0003677
Vimu11g01796 987 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 289 943 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu11g01796 987 FunFam Auxin response factor 850 943 - -
Vimu11g01796 987 SUPERFAMILY CAD & PB1 domains 853 930 - -
Vimu11g01796 987 FunFam Auxin response factor 147 238 - -
Vimu11g01796 987 Pfam B3 DNA binding domain 149 235 IPR003340 GO:0003677
Vimu11g01796 987 Gene3D - 851 943 - -
Vimu11g01796 987 SUPERFAMILY DNA-binding pseudobarrel domain 134 240 IPR015300 -
Vimu11g01796 987 Gene3D - 147 301 IPR015300 -
Vimu11g01796 987 Pfam AUX/IAA family 851 939 IPR033389 -
Vimu11g01796 987 CDD B3_DNA 148 235 IPR003340 GO:0003677
Vimu11g01796 987 MobiDBLite consensus disorder prediction 549 627 - -
Vimu11g01796 987 Pfam Auxin response factor 326 409 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu11g01796 987 ProSiteProfiles PB1 domain profile. 854 938 IPR000270 GO:0005515
Vimu11g01796 987 Gene3D - 364 436 - -
Vimu11g01796 987 FunFam Auxin response factor 364 436 - -
Vimu11g01796 987 SMART B3_2 149 246 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01796 Vimu-Chr11 24568336 24576544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01796 14 556 B3 DNA Binding Superfamily AT1G30330 73.810 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu11g01796 B3 9.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01796 - - gmx:100777789 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01796 11 24568336 24576544 Vimu11g01796 11 24568336 24576544 ECH