Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01791 ATGGACGAAGAAAACCAACGAAGTGTGCCGGTTCTGCCATGGATGCGCCACCCCGTCGACGTCACTCGCTGTGAACAACTCTCCCTCCGCAGAGTTCCTTTTCTGGACCGCAGATTAAAGTCGGCGCTAGAAAACATGGAAATCTCGAAGCTGTTCCCGGTTCAAGTTGCGCTATGGCAAGAAACTATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCATTGCCATTAGGCCTGCGTGTGGGGTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATATCTAGTCTCGTTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCTAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTGCCCACTGTACTTAAATCGACCCAATCTAGCAACAATGATGATGGTGGCAGTGGTGGTGGTGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTGGAGTTGAGAGGGGGTCTAAGCCTCACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGAAGGCTTGTTCAGCTTAATTTACATCACCCTTTGTTCCTCAGTGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAACTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTTTATGCAAATTGATGAATTGTTTTGGAGATCTGCAAATTGACATCAAGGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTTAGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGGGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGAATGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAGGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTCTTCCTTCCCATTTGATTGAAGAACTTCATAGTACCTACCAATCAGCTTGCTCTGATGTTACCAGTTTCACGATTTTTGCTAGAAGCAAGATTCAAGGGAAGTGCTTTGAAGGTTCTACCATGTTACATGGTGAGTGTCTCCCATCTCATTTGGTAAAGGTTATGGTGGAGACTGTATTGGCTATTGATGTCGTAGTTGCTATACTGGCATCAAAGATT 1611 0.4569 MDEENQRSVPVLPWMRHPVDVTRCEQLSLRRVPFLDRRLKSALENMEISKLFPVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLRVGLAVGQSSVADEISSLVYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDDGGSGGGDDVFQLGFPYSPWSRRTCGVERGSKPHSRLAKVVLSATLTRDPGRLVQLNLHHPLFLSAGKMRYRLPENLESFKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLMNCFGDLQIDIKEYSGRQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQNGRCFTLMSNDEVGRFKRLMKKAEASACLEHTLPSHLIEELHSTYQSACSDVTSFTIFARSKIQGKCFEGSTMLHGECLPSHLVKVMVETVLAIDVVVAILASKI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01791 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Vimu11g01791 537 PANTHER RNA HELICASE 35 455 - -
Vimu11g01791 537 Gene3D - 15 298 IPR027417 -
Vimu11g01791 537 Gene3D - 308 509 IPR027417 -
Vimu11g01791 537 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Vimu11g01791 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Vimu11g01791 537 CDD DEADc_DDX51 39 296 - -
Vimu11g01791 537 CDD SF2_C_DEAD 308 439 - -
Vimu11g01791 537 SMART helicmild6 350 431 IPR001650 -
Vimu11g01791 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 452 IPR027417 -
Vimu11g01791 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Vimu11g01791 537 SMART ultradead3 47 311 IPR014001 -
Vimu11g01791 537 Pfam DEAD/DEAH box helicase 59 281 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01791 Vimu-Chr11 24288579 24299462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01791 57 445 Eukaryotic Initiation Factors Gene Family AT3G19760 24.872 5.39e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01791 K14807 - gmx:100789424 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01791 11 24288579 24299462 Vimu11g01791 11 24288579 24299462 ECH