Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01790 ATGCTGCTCAACGCTTTGCAGATGGAGCTAAACTTATTAAAAATGAAAATGATTAGACACCCTAATGTGGTGCATGTGCGTGAGGAGATATATTCCAAAACACAGTTCTTTATTGTAACGGAGCATGTAACTGGTGGGGAACTGTTTGATAAAATTACAAACACCGGGAGAATGGAAGAACCCGAAGCAAGAAAATATTTTCAGCAGCTTATACATGCTGTGGATTACTGTCACAGTAGAGGTGTTTCCCATAAAAACTTAAAGCCGGAGAATCTGTTGGTGGATGCTGATGGAGTGCTTAAAATATTGGACTTTGGAACAAATATGCTGTCCCAACAAGTTGGACCAGATGGGTTGCTTCACACAGCACGTGGTCTGCCACATTATATCGCCCCAGAGGAGAGAATGAACATCGGCTATGAGGATGCAAAGTCTGACATCTGGTCATGTGGTGTTATTCTTTTTTTTCTATTGGCTGGATATTTACCCTTCAAATGTAACGACACTACCAATTTATGCCTAGAGATGTTTAAGGCTGATTTCACATGTCCTTCATTTTTTTCTCCAAGTGCAAAGAGACTAATTAAGAGAATCCTTGATCCCAATCCAGCTACACGGATTGCAATTAAAGATATCTTCGACGATGAATGGTTCAAGAACGAACCTCAATCCCAAGAATTAAGTGCAAGTTTTGATGATGGCTCTGCAGAACCGGTTTCACAGGACCCTGCAGAACCTGTTCCCAAGAATGCATTTCAGATTATGCGTGCTTTTCTTGGCTTCAATCTTGTAGGAAATCTGCTTAACAAGGTACTTGGTAAAAGGGTAAAAAGTTTCGTATCCAAATGCTCCCCAGATGAGATAATTTCAGGAATTGAACGTACAATAGCTTCTATGGGCTTTAATGTTAAGAACAGAAAGTACAAGTTGAAAATTGAATGGGAAAAGGATGAACATAAAGGTCATCTATCGATGGTTATTAAGATCTTTAAGGTCAATCCTTCCCTTTTCAAGGTTGAGGTTCGAAGGGATGGAAAAAATAGCCCTGATTTTAAAGAGTTCTACAGCGATCTATGTGCTGGGCTGCGTGATATCATTTGGGAAGAGAAATCTGCCAACTCAAAAAGAGATGGTGCAAGTACATCAACTGCAAAATAA 1158 0.3981 MLLNALQMELNLLKMKMIRHPNVVHVREEIYSKTQFFIVTEHVTGGELFDKITNTGRMEEPEARKYFQQLIHAVDYCHSRGVSHKNLKPENLLVDADGVLKILDFGTNMLSQQVGPDGLLHTARGLPHYIAPEERMNIGYEDAKSDIWSCGVILFFLLAGYLPFKCNDTTNLCLEMFKADFTCPSFFSPSAKRLIKRILDPNPATRIAIKDIFDDEWFKNEPQSQELSASFDDGSAEPVSQDPAEPVPKNAFQIMRAFLGFNLVGNLLNKVLGKRVKSFVSKCSPDEIISGIERTIASMGFNVKNRKYKLKIEWEKDEHKGHLSMVIKIFKVNPSLFKVEVRRDGKNSPDFKEFYSDLCAGLRDIIWEEKSANSKRDGASTSTAK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01790 385 ProSiteProfiles Protein kinase domain profile. 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01790 385 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 344 - -
Vimu11g01790 385 SUPERFAMILY Protein kinase-like (PK-like) 14 229 IPR011009 -
Vimu11g01790 385 Pfam Protein kinase domain 7 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01790 385 CDD CIPK_C 250 364 - -
Vimu11g01790 385 FunFam Maternal embryonic leucine zipper kinase 3 234 - -
Vimu11g01790 385 Pfam NAF domain 250 304 IPR004041 GO:0007165
Vimu11g01790 385 Gene3D Transferase(Phosphotransferase) domain 1 3 248 - -
Vimu11g01790 385 Gene3D Kinase associated domain 1, KA1 249 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01790 Vimu-Chr11 24253662 24256620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01790 32 384 CBL-interacting serine-threonine protein kinases AT1G30270 50.398 3.50e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu11g01790 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01790 - - vum:124837064 663.299