Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu11g01780 | ATGGAACACCTGAACCAGCCATTCATAGTCACTTTCCTTTCTATCCTTTTATGTATTGCTGCAGTTAATCCATCTTTGGCTCTGCAGAAACCCTCAAACCAAAACCAAACAATGACTTACATAGAGTCCTCTTGCCAAGGAACAAGGTTCCCTGATCTGTGCATACGTTGCCTAGCCAGATTTTCAAATTCCACTATCGATGGCCCTCAGCACTTGGCCCATATTGCCCTTTCGGTGAGCCTCTTAAGGGCACTAAAAACTAGGGCATACTTGGTAAAAGTGGCCAAGGAACTTGAAGAGTTCAAGAATGATAGAGTGTACCTTACTGTGCAAGATTGTGTAATGCAACTGAATGATAGTGTTGAGCAACTTTGCCAATCCATCAAAGAGCTCCGCAGGATAAACAAAAGCACCATCATAGATGACAACTTATTGTGGCACATAAGTAATGTTGAGACATGGGTAAGCACTGCCTTAACAGATGCTAGCTATTGTGTTCAATCGTTCCCTGGAACAAACATGAGTAAGAGGACTGCTACTATAAAGTTTAAGGCACAAAATGTTGCAGAGGTCACTAGTAATGCACTGAATTTATTTCACAGATATGCTTCTAGTTACCATGTAGCAGCTAGAGCCACCATGAAACCCTAA | 651 | 0.4194 | MEHLNQPFIVTFLSILLCIAAVNPSLALQKPSNQNQTMTYIESSCQGTRFPDLCIRCLARFSNSTIDGPQHLAHIALSVSLLRALKTRAYLVKVAKELEEFKNDRVYLTVQDCVMQLNDSVEQLCQSIKELRRINKSTIIDDNLLWHISNVETWVSTALTDASYCVQSFPGTNMSKRTATIKFKAQNVAEVTSNALNLFHRYASSYHVAARATMKP | 216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu11g01780 | 216 | NCBIfam | pectinesterase inhibitor domain | 11 | 201 | IPR006501 | GO:0004857 | |
| Vimu11g01780 | 216 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 36 | 202 | IPR035513 | - | |
| Vimu11g01780 | 216 | CDD | PMEI-like_3 | 43 | 204 | - | - | |
| Vimu11g01780 | 216 | FunFam | Pectinesterase inhibitor 3 | 36 | 203 | - | - | |
| Vimu11g01780 | 216 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 12 | 198 | - | - | |
| Vimu11g01780 | 216 | Coils | Coil | 114 | 134 | - | - | |
| Vimu11g01780 | 216 | SMART | PMEI_2 | 36 | 198 | IPR006501 | GO:0004857 | |
| Vimu11g01780 | 216 | Pfam | Plant invertase/pectin methylesterase inhibitor | 40 | 198 | IPR006501 | GO:0004857 | |
| Vimu11g01780 | 216 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 40 | 202 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu11g01780 | Vimu-Chr11 | 24065478 | 24066128 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu11g01780 | 24 | 199 | Carbohydrate Esterase | AT3G49220 | 27.778 | 2.01e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu11g01780 | - | - | pvu:PHAVU_002G180000g | 301.212 |