Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01770 ATGGATGTCGGTTGTGATGCTTCGGTGCTTCTTGATGATACACCATATTTCACTGGTGAAAAGAATGCTCTTCCTAATCAGAATTCACTTCGGGGGTTCGAAGTCATTGAGGACATAAAACAACATGTTGAAAGATTGTGTCCATACACAGTCTCCTGCGCTGATATATTAGCATTAGCAGCCAGGGAAGCTATTGATATGGTTGGAGGACCTTCTTGGCCTGTTGCATTAGGCCGAAGAGATGCAACAACAACAAGTAAGCAGGCAGCTGAGCAACAAATTCCCTCCCCAATTGAGTCTCTAGAAAACATCACTGCAAAGTTTTACTCCAAGGGTCTTGACTTGAGGGATGTTGTAGCCCTTTCAGGAGGACATACAATTGGTTTTGCTCAATGCTTCACCTTCAAAGGGAGACTTTTTGACTATCAAGGCTCTGGCAGACCTGATCCTGTGCTTGACTCTTCGCTTCTCACAACATTGCAAAGCATGTGCCCAAATGAAGAAACTTCGAACAGCAATCTAGCACCTCTTGATGCTACAAGCACCTCCACGTTCGACAATGAGTACTATAGAAATCTCATATACAACACAGGCCTTCTACAGTCTGATCAAGCACTAACTAGGGATCGAAGAACTGCTGCTATGGTTTATTATTACAGCAACAACCGTTTATCCTTCTACAATGATTTTGCCCAATCCATGGTCAGGCTTAGTAATGCAGGCGTTCTTACAGGAAGAATGGGAGAAATTAGACAGAAATGTGGCTCTGTAAACTAA 777 0.4324 MDVGCDASVLLDDTPYFTGEKNALPNQNSLRGFEVIEDIKQHVERLCPYTVSCADILALAAREAIDMVGGPSWPVALGRRDATTTSKQAAEQQIPSPIESLENITAKFYSKGLDLRDVVALSGGHTIGFAQCFTFKGRLFDYQGSGRPDPVLDSSLLTTLQSMCPNEETSNSNLAPLDATSTSTFDNEYYRNLIYNTGLLQSDQALTRDRRTAAMVYYYSNNRLSFYNDFAQSMVRLSNAGVLTGRMGEIRQKCGSVN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01770 258 Gene3D Peroxidase, domain 2 95 237 - -
Vimu11g01770 258 CDD secretory_peroxidase 4 257 IPR033905 GO:0004601|GO:0042744
Vimu11g01770 258 Pfam Peroxidase 4 222 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 ProSitePatterns Peroxidases proximal heme-ligand signature. 117 127 IPR019793 -
Vimu11g01770 258 PRINTS Plant peroxidase signature 116 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 232 245 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 50 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 176 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 69 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 31 44 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Plant peroxidase signature 192 209 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PANTHER PEROXIDASE 72-RELATED 4 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 ProSiteProfiles Plant heme peroxidase family profile. 4 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 FunFam Peroxidase 95 237 - -
Vimu11g01770 258 PRINTS Haem peroxidase superfamily signature 69 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Haem peroxidase superfamily signature 117 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 PRINTS Haem peroxidase superfamily signature 51 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 SUPERFAMILY Heme-dependent peroxidases 4 258 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu11g01770 258 Gene3D - 4 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01770 Vimu-Chr11 23677890 23679472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01770 4 255 Peroxidase AT1G49570 61.811 3.21e-110 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01770 K00430 - gmx:100812961 445.662