Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01759 ATGAGAATTCCAGTAATAGCCTCTCTTGTCACTGCGTCGTCGTTGGTATTGTTTTTCGTCATCGGATTCATAATCTTCCGATGCGTAAAAAGAGTTAACTCCAAGAGAGATAGCAACTCGGAGTCTTCAAGCACGCGCTGCCGCGAGTTTTCTCTGGCCGAGATAAGAGCAGCCACCAACAACTTCGACGACCGTTTAATCGTGGGCAGAGGAGGGTTCGGGAACGTGTACAAGGGACACATCGACACGAGTCACAAGCCCGTTGCCATCAAGCGGCTCAAACCGGGTTCGGACCAGGGTGAACACGAATTCCAAACCGAGATCAGGATGCTCTCGCGATTCCGCCACGTGCACTTGGTTTCCCTCATCGGGTACTGCAACGACGGTAGAGAAATGATACTCGTGTATGATTTCATGGCGCGTGGGACCCTCCGCGACCACTTGTACGGCTCAGGCGAGGCGCTGTCGTGGGAGCGGCGACTGAAGATCTGCCTGGAGGCCGCACGTGGGCTTGACTTCCTCCACGCCGGCGTGGGTCGGCAGAGCGTAATCCACCGTGACGTGAAGAGCACAAACATCCTGCTGGACGAGAATTGGGTTGCGAAGGTGTCGGATTTCGGGTTGTCAAAGGTG 633 0.5498 MRIPVIASLVTASSLVLFFVIGFIIFRCVKRVNSKRDSNSESSSTRCREFSLAEIRAATNNFDDRLIVGRGGFGNVYKGHIDTSHKPVAIKRLKPGSDQGEHEFQTEIRMLSRFRHVHLVSLIGYCNDGREMILVYDFMARGTLRDHLYGSGEALSWERRLKICLEAARGLDFLHAGVGRQSVIHRDVKSTNILLDENWVAKVSDFGLSKV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01759 211 Gene3D Phosphorylase Kinase; domain 1 24 138 - -
Vimu11g01759 211 FunFam Receptor-like protein kinase FERONIA 34 138 - -
Vimu11g01759 211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vimu11g01759 211 Pfam Protein tyrosine and serine/threonine kinase 68 210 IPR001245 GO:0004672|GO:0006468
Vimu11g01759 211 SMART serkin_6 62 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01759 211 SUPERFAMILY Protein kinase-like (PK-like) 37 210 IPR011009 -
Vimu11g01759 211 PANTHER OS07G0166700 PROTEIN 46 210 IPR045272 GO:0004714|GO:0006468
Vimu11g01759 211 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Vimu11g01759 211 Gene3D Transferase(Phosphotransferase) domain 1 139 211 - -
Vimu11g01759 211 ProSiteProfiles Protein kinase domain profile. 62 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01759 Vimu-Chr11 23524022 23525214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01759 31 210 Receptor kinase-like Gene Family AT3G51550 60.773 1.86e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu11g01759 PK_Tyr_Ser-Thr 4.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01759 - - ccaj:109805163 326.25