Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01723 ATGATTGGAAGTAAAGATCGAGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAAGGCACTATTTTGGGGCAAACAGGGAGTACCCAGATGAGAAAGGTGTTTTATTTCTGAGAGATTCACGGATGGGTGGTGGTGGAGGTGTTGATGGGGTTCTTCGTCCAAAACCCACCGAGGTTGTTGTTGGAAGCTCGGGGTTCCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAAATCAGTTTTTCTGAGAAAGAGAATCCTGGTAAAAGCTTGCTGAGTTCCTTTGAGAGAATAAGCAACAAAGGGAAAGAGGTTGTGATTTGTGAGAACTCAAATCAGGATGGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAAGGAGAAGAAGCAAAAACTGGAGACCCTCAATCTCTCTCTTGCTTTGCCCGATGTTTCACTTTCCCTCACTGCTTCAAACGCCTTGCAAAATGGTGATCAACAAGTTAGGAATAAACCTTGTAGGCCATCCACTACTCACACTTCATACTCCAATGACTACACAGCAGCCTCTTTGTCTTACTCTTATTCCCACCCGTTCTCTCACAACCCAAGCTGCTCGCTAACCCGCAATTCAACCGATAATTTTGAGTACTCGGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACCAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGACCAGCCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCCAGGCCAAGGCTTGAGGCTCAGTCAGGGGACTCAAGGGGTAGGAACTCTGATAACCTGAGAATCTTGGATGGCTTGGATGATGGGAAGGTAAGGAAGCATTCCAGGCCAGAGAGAATTATTAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAACATCAACCAAAGAATACTTAAAAAATCTCATTGAGAAGCCTGATAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGATAGGAGATCGGACCTAACAAAGGAGAGTCTTTCAAAGTGCCACAAAGTACAGTTAGAGGTTTTAGTGGCTCTCAAGATGGGGCTTGCTAGCTTCCTATCTAGCAAAGTTCAGTTGTCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGGAATGTAACCTGCATGAGTTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAGCACTTGTAGTTGGATAGGATGTGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCAGAGAAATCTTATCAAGCCTGGACCTAGCTTGAAGGGTCCTTCAGGGACCTCAGAGGTGCAGTTTCATTGTCTCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTAAAAGACGTGTTTCTGTATTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAAATGGTATCTCCTTCGGACGCTTGCAATTACATCGTACAATTTTTCAACTGTAAGCACGCAGACAGCATGTTAGATTTTCCTGCTTCGGCTGGTATTTCTTCAAAGGATTTAGCAGCCTCTCAAACTAACCTTACAAAGGATATACCATCTCTTTCAAAAGCTAACCCTCTATTACCAAATTATGGTTATGAGATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGTGAAGTACTTCAGAAAGACCTCAAAGCTTCCATGTTGAGTGAACTGAAAAACGAGGCTGATTTCCATTTGGGGGCTTTATTAAGAAAAGGTGGACTTGAAAGTTTGGGGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTTCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACAAAGACTGCCCAGATGGAAGAGGAGTATGCTGAAAAGCTTTCCAAACTCTGCTTGCACGAGACTGAGGAAACACAGAGGAAGAAAATGGATGAACTCAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGAAGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAG 2424 0.4328 MIGSKDRVAESEGENSRSKLSRHYFGANREYPDEKGVLFLRDSRMGGGGGVDGVLRPKPTEVVVGSSGFQELTLSYLCDNPKISFSEKENPGKSLLSSFERISNKGKEVVICENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNKEKKQKLETLNLSLALPDVSLSLTASNALQNGDQQVRNKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALTSHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSDNLRILDGLDDGKVRKHSRPERIIREIVSESITVMALTIQELTDDVITSTKEYLKNLIEKPDKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVALKMGLASFLSSKVQLSEMVEIFLYKRCRNVTCMSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANSTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCLGCGHASEMFGFVKDVFLYCAKDWGLETLMKELDCVRRIFRASEDRKGKELHVKTDDLLLKLQTKMVSPSDACNYIVQFFNCKHADSMLDFPASAGISSKDLAASQTNLTKDIPSLSKANPLLPNYGYEMGYSRSHPDAMSSEVLQKDLKASMLSELKNEADFHLGALLRKGGLESLGSIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKMDELKVLENSYFDYYKMKKRMQEEIDGLLRRMEATKQQWV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01723 807 CDD PHD_OBE1_like 472 531 IPR047578 -
Vimu11g01723 807 MobiDBLite consensus disorder prediction 280 295 - -
Vimu11g01723 807 Coils Coil 757 777 - -
Vimu11g01723 807 Coils Coil 785 805 - -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 703 723 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 433 454 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Vimu11g01723 807 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 742 764 IPR004082 -
Vimu11g01723 807 Pfam Coiled-coil region of Oberon 668 796 IPR032535 -
Vimu11g01723 807 MobiDBLite consensus disorder prediction 180 199 - -
Vimu11g01723 807 MobiDBLite consensus disorder prediction 280 321 - -
Vimu11g01723 807 Pfam PHD - plant homeodomain finger protein 442 566 IPR032881 -
Vimu11g01723 807 MobiDBLite consensus disorder prediction 132 153 - -
Vimu11g01723 807 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g01723 807 Coils Coil 138 158 - -
Vimu11g01723 807 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 104 806 IPR004082 -
Vimu11g01723 807 Coils Coil 709 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01723 Vimu-Chr11 22539673 22543440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01723 442 539 PHD Gene Family AT5G57380 28.571 2.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01723 - - gmx:100820216 1410.2