Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01719 ATGGCTAATTTGGTATTGCATCATAATGAAAATGTTCCAGTGAGCTTCTTATTCCTTGCATCAATGTTCTTGGTCTTGGTGGCATCAATCAGTTCCCAAGAAGAGAACAAACACGAAGAGTGTAGCAAGCCATTCAGCTGCGGACTAACGTCCATCTACTACCCTTTCTGGGGAGGGAGCAGACCCAGTTATTGTGCTAGCAACCACCAATTCAAGCTCAACTGTGAGGATAATCAAAACTCCACCCTTCAACTTGGCTCACAAACTTTTCAAGTTCTTCACTTTGATCCAGTTCAGTACAGCGTGAAAATGGTTCGAACAGGCATTGTCTATGATAATTGCTCTTCCTCGACCGTAACCAACAACTCCGTGGATTCAAATCTCTTTAGATACCTGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCTATTCCTTGATTTCAAACATCACACGCTCTTTTCAATGCAAGGACGATGGTAACAAGAGTGCTTTCTATGGGGACCCTGCATCTGGGAAAGTCCAAGACTGTGATGGAGCTAGGATTGAAGTGCAAGTAGCACAGGAACTTGACCCTGATGGGGGAATTCAAGGACTCAACAAAGCCTTGAGTGAAGGATTTGAAATACATCTTATTTCAGAGGCACAAGTTCAACAGTGCTTAAAATGCGTTTCAACTAATGGAACATGTGGGGCTAATAATGAGTCTCAGTTTTCATGTTTTTGCCCCAATGGAAGTGAAGGTTTAGATTGCTCTAATAGCGATAAATGGAACTGGCGAAGGAAGCTGGTTATAGGTGTTGCTGCTGCAGTGATAAGTGGAATTGTATTTAGCCTTGGCTTTTACATCTATTATGGTCGTCTAAAGAAGAAGAATCATCTCCGTGAAGTAACATCTTCTGTAATATATAATTCTAAAGGAATCTCACATAGTTCTTCTTTAGAAGATTATGAGAAGGGAAATAAATACATTGGAGTCCACTTCTTCACCTATAGTGAACTTGAAGAGGCCACAAACTTCTTTAATCCAGACAGAGAACTAGGAGACGGAGGATTTGGAAAAGTGTATTTTGGGAAACTTCAGGATGGACGATTAGTGGCAGTGAAGAGAATGTACGAGAACAGTTTGAAAAGAGTTGAGCAATTCGTGAATGAAGTGGAGATCTTAACTGGCCTACACCACCAGAACCTTGTGTCTCTGTATGGATGCACTCCTCGCCACAGTAGAGAACTTCTGCTGGTGTACGAATACATTCCAAATGGAACCGTGGCTGATCATCTTCATGGTCAAAGAGCAAAACCTGGCACACTCCCTTGGCACATCAGAATGAACATTGCCATTGAAACTGCAAGTGCATTGGTATATCTCCACGCTTCTGATATAATCCACAGAGACGTAAAAACCAGCAACATTCTCCTTGACAACCACTTCAGTGTCAAAGTAGCAGATTTTGGCCTCTCACGTCCCTTCCCAATCCATGCCACACACGTTTCCACTGCCCCACAAGGAACTCCTGGTTATGTGGATCCAGAGTATCACGAGTACTACCAGCTCACTGATAAGAGTGATGTTTATAGCTTCGGGGTGGTGCTGATCGAGCTCATATCTTCCATGCATGCGGTTGATATCTCTAGGCGTAGACATGAGATCAACTTGTCCAACATGGCCATCAAGAAGATCCAAAGTGGTGCATTGCATGAGATTGTGGATCCAACTCTAGGGTTTGAGTCGGATTTCAAGGTCAGGAAAATGATCAGTGCAGTGGCTGAGTTGGCGTTTCAGTGCTTGCAGAGTTCCAAAGATGTAAGGCCTACTATGGCAGAAGTGCTGGATAGACTTGAGGATATAAGAAGTGATGGGAAGTATAAAAGCAAGCATGAGGTGCTGGATATATCAGAAGATGATACTGCTTTGTTAAAGATTGAACCTCCTCCTCCTTCACCTGATTCAAATTTTCAAACTGTACGTAGTATTGTTAACTAG 1986 0.4275 MANLVLHHNENVPVSFLFLASMFLVLVASISSQEENKHEECSKPFSCGLTSIYYPFWGGSRPSYCASNHQFKLNCEDNQNSTLQLGSQTFQVLHFDPVQYSVKMVRTGIVYDNCSSSTVTNNSVDSNLFRYLNVRNITIYYGCPYSLISNITRSFQCKDDGNKSAFYGDPASGKVQDCDGARIEVQVAQELDPDGGIQGLNKALSEGFEIHLISEAQVQQCLKCVSTNGTCGANNESQFSCFCPNGSEGLDCSNSDKWNWRRKLVIGVAAAVISGIVFSLGFYIYYGRLKKKNHLREVTSSVIYNSKGISHSSSLEDYEKGNKYIGVHFFTYSELEEATNFFNPDRELGDGGFGKVYFGKLQDGRLVAVKRMYENSLKRVEQFVNEVEILTGLHHQNLVSLYGCTPRHSRELLLVYEYIPNGTVADHLHGQRAKPGTLPWHIRMNIAIETASALVYLHASDIIHRDVKTSNILLDNHFSVKVADFGLSRPFPIHATHVSTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEINLSNMAIKKIQSGALHEIVDPTLGFESDFKVRKMISAVAELAFQCLQSSKDVRPTMAEVLDRLEDIRSDGKYKSKHEVLDISEDDTALLKIEPPPPSPDSNFQTVRSIVN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01719 661 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 654 IPR044652 GO:0004672
Vimu11g01719 661 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01719 661 SMART serkin_6 342 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01719 661 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vimu11g01719 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vimu11g01719 661 FunFam Wall-associated receptor kinase-like 20 419 627 - -
Vimu11g01719 661 SUPERFAMILY Protein kinase-like (PK-like) 320 615 IPR011009 -
Vimu11g01719 661 MobiDBLite consensus disorder prediction 642 661 - -
Vimu11g01719 661 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Vimu11g01719 661 Gene3D Transferase(Phosphotransferase) domain 1 419 631 - -
Vimu11g01719 661 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
Vimu11g01719 661 ProSiteProfiles Protein kinase domain profile. 342 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01719 661 Gene3D Phosphorylase Kinase; domain 1 314 418 - -
Vimu11g01719 661 Pfam Wall-associated receptor kinase C-terminal 175 245 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01719 Vimu-Chr11 22357375 22360374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01719 43 650 Receptor kinase-like Gene Family AT1G25390 43.252 1.78e-145 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu11g01719 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01719 - - vra:106766190 1290.4