Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01708 ATGGACAGGGACAAGGACAAGGACAAGTCTCACACTCATAGTTTTTTTCGCAGTTTCGTTAAACACTTCAAATTCGGTTCCAGTAAAGAGGGAAGCGATGAAGCTGACATACAGAAAATGGCTGCGCAAGAACAGAAGATTTTTGCCTACGAAACCTTGGCTTCTGTCACCAAGAATTTTAGTGATATTCACAAGCTAGGCGAGGGAGGTTTTGGCCCTGTCTACAAGGGTAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACAGAGTTCAAATCAAGGGAAGAAAGAGTTCATGAACGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATCTGGTGGGCTATTGTGTCCATGGCAATGAAAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGTCTAGACAAGTTTCTTTTCAGTGAGTGCTTCTTCAATGCCACTCCTCATTCATTCATCAAATCATCACAAACCCATCCTCAATTCCTCATTTTTCCCGATCATTGTCGTTTATGTTCTTCACTATTTCCAGGAGAAAACTGA 561 0.4242 MDRDKDKDKSHTHSFFRSFVKHFKFGSSKEGSDEADIQKMAAQEQKIFAYETLASVTKNFSDIHKLGEGGFGPVYKGKLNDGREIAVKKLSQSSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFSECFFNATPHSFIKSSQTHPQFLIFPDHCRLCSSLFPGEN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01708 186 ProSiteProfiles Protein kinase domain profile. 60 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01708 186 Pfam Protein tyrosine and serine/threonine kinase 64 148 IPR001245 GO:0004672|GO:0006468
Vimu11g01708 186 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 148 - -
Vimu11g01708 186 FunFam Cysteine-rich receptor-like protein kinase 10 24 135 - -
Vimu11g01708 186 SUPERFAMILY Protein kinase-like (PK-like) 40 151 IPR011009 -
Vimu11g01708 186 SMART tyrkin_6 60 181 IPR020635 GO:0004713|GO:0006468
Vimu11g01708 186 Gene3D Phosphorylase Kinase; domain 1 20 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01708 Vimu-Chr11 22282917 22283814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01708 50 156 Receptor kinase-like Gene Family AT4G21400 53.271 3.93e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g01708 PK_Tyr_Ser-Thr 9.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01708 - - var:108347873 287.345