Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01696 ATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATAAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTTAATGAACCTGAAATATGGCCACAAGAACCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAATATTTCGATGAAAAGATGAAAAGGATTGAAGGAGAGATTTCCAAAATGCACAAAGGGAAGATCCAGCTCATGTATCCAACCTGGGATGACTCTTACAATACTCTTGAAGAGGAACAGTTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGTTGTTCCTTACTTGGCTCCAAATTTAGGTAGTCACCTCAGTTTCATGCAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGACAACAATCAAGTACCATTTTATCCATGTCATCTCAGCCAAAGTTCTCTACCTTCTTTGTTTCAATTGGGTCAAAACTTTACCCAATTGATAGATAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTGCAAGTGATCATAAAATGAATACACAACAGGATGATAGAACAAACAAAAACCAAAATTCATCATCGTGCTATTACAATGCAAATATTCAAACAATGTTGCAGTGCGATGCAACATTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTGAACCTAATGATGTCTCTAATATGCTTCAACCTCATTTTCTAAACTATATGCACAGAAGAAATTAG 882 0.3696 MDLIEKEKARKTTFQKRKNGLIKKVYEFSTLCSVDVGVIIFASKFLNEPEIWPQEPRELKRVIQKYLNTTSDRRPKVYDVEEYFDEKMKRIEGEISKMHKGKIQLMYPTWDDSYNTLEEEQLRMFVSILDAKLDACNQRMNMFKRDSKVVPYLAPNLGSHLSFMQNMSQTQVFPTNDNNQVPFYPCHLSQSSLPSLFQLGQNFTQLIDKNIAVDWNNQVGASDHKMNTQQDDRTNKNQNSSSCYYNANIQTMLQCDATFQSLSNRPGPSQGFEPNDVSNMLQPHFLNYMHRRN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01696 293 PANTHER MADS BOX PROTEIN 4 120 - -
Vimu11g01696 293 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vimu11g01696 293 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Vimu11g01696 293 CDD MADS 1 44 - -
Vimu11g01696 293 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Vimu11g01696 293 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Vimu11g01696 293 Gene3D - 6 91 IPR036879 GO:0003677|GO:0046983
Vimu11g01696 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 42 IPR002100 GO:0003677|GO:0046983
Vimu11g01696 293 SMART madsneu2 1 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01696 Vimu-Chr11 21978464 21979423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01696 1 185 Type I MADS-box Gene Family AT5G55690 31.771 2.37e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g01696 SRF-TF 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01696 - - ccaj:109800518 363.229