Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01662 ATGTCTTTGGCTGCTCCGAGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAATTGTCCTCAAAGACTCCCCCATTCTGCTGTATTCAGCTTTGCCCTTGATCAGACAGTCTTTGTCATCTTCATCCTCTACCTCAACTTCATGTTTCTGTGATCACTGCTTCAGAACCTTGCCTCCGTTTTTACAGGGAGATTCTTCGTCATCCACAGTTTTGTGCCCCAATTGTCGCTACCATTGTTTCTGCAGCTCAAGTTGTCTTTCAAAGGCATTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCGTTATCTAGTCTCAGATCCAATTCTCTACTGCTTGAACAGCCGCTTGAGCGCCAAGTCCAGGCTAATTTTCTCATAGCTGCCTACAATCTTGCCAATATCTCCCCTTCAGACTTCCAAATTTTGCTTTCTCTCCAGGGTTCTCCTGATGATACCGCCATTGCTGCAGCCAAGTTCCTACACCCCCTTATTTCATCTCTCTGCTCACTTTCTCTCATTAGTCCCCAGAATGGATTTTCTTTAGAACTCACCTCTGCACTTCTTGTGAAGGACAAGCTCAATGCCTTTGGAATAATGCAGCCCTTCTCTGCAGATGACGACCAGAGGTCTGTAAGAGCCTATGGTATTTACCCCTATGCTTCCTTTTTTAACCATGACTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACATCAATCCACATGAAGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATTTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAAAAGAGATTGATTGAAGACTATGGCTTCTCCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGATAATGCTGAGGATGAGGAGGAGGTTATGGATGAGGACCAATATGAAATTATGGAAGCGTCAGACACAGATAAACATGCTCTTGAAGATAATAATGATTTCCCACATGCATATTTCTTTTTAAAATACATGTGTGATAGAACGAATTGCTGGGGAACATTAGCTCCATTACCTCCGGAGGGTGATACTCCATCTAATGTCATGGAATGCAATGTCTGTGGAAAATTGAAGAGTGACGATACCTTTGATGTTGATGAAGGTCTTATGGAGGACTAA 1245 0.4265 MSLAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLKDSPILLYSALPLIRQSLSSSSSTSTSCFCDHCFRTLPPFLQGDSSSSTVLCPNCRYHCFCSSSCLSKALNSSHSSWVCQALSSLRSNSLLLEQPLERQVQANFLIAAYNLANISPSDFQILLSLQGSPDDTAIAAAKFLHPLISSLCSLSLISPQNGFSLELTSALLVKDKLNAFGIMQPFSADDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDINPHEDSHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFSCNCDRCNVESNWSDNDSVEDNAEDEEEVMDEDQYEIMEASDTDKHALEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPEGDTPSNVMECNVCGKLKSDDTFDVDEGLMED 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01662 414 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 409 IPR044238 -
Vimu11g01662 414 Pfam SET domain 19 283 IPR001214 GO:0005515
Vimu11g01662 414 CDD SET_SMYD 208 310 - -
Vimu11g01662 414 SMART set_7 8 290 IPR001214 GO:0005515
Vimu11g01662 414 Gene3D - 128 210 - -
Vimu11g01662 414 Gene3D SET domain 21 310 IPR046341 -
Vimu11g01662 414 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Vimu11g01662 414 Gene3D - 64 123 - -
Vimu11g01662 414 SUPERFAMILY SET domain 8 308 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01662 Vimu-Chr11 20686276 20689954 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu11g01662 SET 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01662 - - gmx:100783406 724.161