Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01653 ATGGTTTTTCCAAAACCTTCTTCTGAATCTGACCTCTTTCTTTCCAACTTTGCCTCTTGTTATGGTGGAGACTCTCTTCCCAGGTTCACCATGCCTCACAACTCCATGCCTAAAGAGGCAGCGTACCAGAACATACATGATGAGTTACAGCTTGATGCTATTCCCAAGCTTAACTTGGCTTCCTTTGTCACCACTTCTATGGAGGAGGAGTGCAACAAGCTCATCATGGAATCTATCAACAAGAACTATGTAGACATGGACGAGTATCCTGCCACTACTGACCTTCATAATCGGTGTGTGAACATGATAGCACGTTTGTTCCACGCTGAAATTGGAGAAGATGAGAATGCTATTGGAGCAGGAACTGTTGGCTCATCAGAAGCAATAATGCTGGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAGCGTAAGGCAGAAGGCAAGCCTTATGATAAGCCTAATTTGGTCACTGGCTCCAATGTACAAGTATGTTGGGAGAAATTTGCGAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTCAGAGAAGGATACTACGTTATGGATCCTGCCAAAGCAGTCGAGCTGGTTGACGAAAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACATACAATGGAGAGTTTGAAGACGTGAAGCTCTTGAATGACTTGCTGTTACAAAAGAATAAGCAAACTGGATGGGAAACTCCTATTCATGTGGATGCTGCAAGTGGTGGTTTCATTGCTCCATTCCTATATCCAGAGTTGGAGTGGGATTTCAGGCTGGCATTGGTGAAGAGCATAAATGTGAGTGGACACAAATATGGGCTTGTTTATGCTGGTATTGGTTGGGTTATTTGGAGGACAAAGGATGACTTACCAGAAGACCTTGTGTTTCATATCAATTATCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAGTTCGCCTTGGCCAAGAGGGTTATCGGAGCATAATGGAGAACTGCAGAGAAAATGCAATGGTGCTGAAGGAAAATATAGAGAAAAGTGGACGCTTTAACATACTATCGAAAGACGATGGTGTTCCAGTGGTGGCATTTTCTCTGAAAGACAGAAGCCAGTACGATGAGTACAAGATATCAGAGATGCTAAGGCGCCACGGTTGGATCGTACCAGCTTATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTGATTAGGGCTGAGTTTTCACGTACCCTTGCTCAACGCCTTGTATTTGACATCAACTATGTGCTGCATGAACTTGAAAAACTACATCTTCCCAAAGTGATCAACAACATTACAGAAGAGAAGGAGTTGGTTGAAAGTGGGGTTAAGAAAACAGCATTGGATGCACATAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCGTAG 1476 0.4404 MVFPKPSSESDLFLSNFASCYGGDSLPRFTMPHNSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHAEIGEDENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWETPIHVDAASGGFIAPFLYPELEWDFRLALVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLVRLGQEGYRSIMENCRENAMVLKENIEKSGRFNILSKDDGVPVVAFSLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAQRLVFDINYVLHELEKLHLPKVINNITEEKELVESGVKKTALDAHREIIAQESNKRQKIMAA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01653 491 FunFam Glutamate decarboxylase 65 359 - -
Vimu11g01653 491 NCBIfam glutamate decarboxylase 16 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu11g01653 491 Gene3D - 65 359 IPR015421 GO:0003824
Vimu11g01653 491 Gene3D - 2 64 - -
Vimu11g01653 491 FunFam Glutamate decarboxylase 360 447 - -
Vimu11g01653 491 SUPERFAMILY PLP-dependent transferases 11 445 IPR015424 -
Vimu11g01653 491 FunFam Glutamate decarboxylase 4 64 - -
Vimu11g01653 491 Gene3D - 360 446 - -
Vimu11g01653 491 PANTHER GLUTAMATE DECARBOXYLASE 13 484 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu11g01653 491 Pfam Pyridoxal-dependent decarboxylase conserved domain 32 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01653 Vimu-Chr11 20559955 20562062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01653 1 479 Calmodulin-binding Proteins AT5G17330 74.538 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01653 K01580 - gmx:100782330 916.376