Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01640 TTGGGGTCTTCAACTTCAACTTCAACGATAGCTATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCACGCGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAACTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACAGCTGGTGGACCATCTGTATCTGCACCCCCATCACAGATTCCAACAGCATCTGCGACACATGCATCTTACAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGACTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCACGTTCCAGTTACCGGCCAAGGAGCTGAGAATCCAGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAATACACTCAGGAAAGGAAAACTTCACAAGGAAATGTTGCAAAGTCAGGTGGGGGCCCTGAACCTAAACCTGCTCCAAAAATTGACTCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCCACCACCCTCCGTAGGATTTGATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAGCCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCACCTGGGTTTGATGTCCTTGTAGCCGATGAACTTAGAAATTCTGAATACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACACTTTGAACGAATATGATTTAGGGCATTCTGGTGAATACGGTTTAGCAGCTGATATTGAACGGGAAAGATTTCGTGTGCCTCAAAGTTATGAGTCATATGATCAGATGCAGGAACCATATCTTTGGGAGCAGCACAGGAAGGCTTCGGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGTAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCACTTATCCAAGCGCAGAAAAGGCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGAAGAATAAAACTTCCAGCAAATGGTGGTGCAGATCAGCTAGAGAGGGATGACAGAGGGAGAATTAGAGGCAGGTTATTGTCTGGAAGGTTGCAGGCCACTCAGCAAGGAAGAATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAGGATAGATTAATGGGTAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCAGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAGCCACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACAGTCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTAAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGACCTGGAGGCAGAGCTGATGCAGACTCAGGCAATGGCAAATCATCTAATATTAAAAATGAAGAAGTTACCAATGGCTCAGATCCTACCCAGGTCACGAACACACAAAATGGTTTGTTGTCTGAGATCAAGGAATATGTCAACAATCAAAATAATGAAAAATCCAAGGTTGAGATCACTGATGCAGTTGGAGGAGAGACTGGTGCAACTGATGGTCAATACGAGGAGGGAATGTACGATGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGATACTACGAGTATGAACAAGGTGAAGAGTGTGAAAATCAGGAGGAAGAGTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2163 0.448 MGSSTSTSTIAMVTPQPQLQVQPQQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHASYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAHVPVTGQGAENPGFKKPFGTNEKYTQERKTSQGNVAKSGGGPEPKPAPKIDSAPKRNMFELEKEMPPPSVGFDNEASRFKTSSPPVTNGPTVVRSSRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSEYYHGEDEFGKARGPDERNLDTLNEYDLGHSGEYGLAADIERERFRVPQSYESYDQMQEPYLWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHHLSKRRKGNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPANGGADQLERDDRGRIRGRLLSGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDRSDFAGPKSLAELKNGRNPENREPQPLGKRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGPGGRADADSGNGKSSNIKNEEVTNGSDPTQVTNTQNGLLSEIKEYVNNQNNEKSKVEITDAVGGETGATDGQYEEGMYDEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEECENQEEEYMDEEDGDDFAKKIGVIHS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01640 720 MobiDBLite consensus disorder prediction 656 672 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 532 583 - -
Vimu11g01640 720 Pfam Zinc-finger containing family 36 91 IPR041686 -
Vimu11g01640 720 Gene3D - 118 198 - -
Vimu11g01640 720 Gene3D - 27 92 - -
Vimu11g01640 720 SUPERFAMILY CCCH zinc finger 129 153 IPR036855 GO:0046872
Vimu11g01640 720 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Vimu11g01640 720 MobiDBLite consensus disorder prediction 451 470 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 240 260 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 642 672 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 374 397 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 478 617 - -
Vimu11g01640 720 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Vimu11g01640 720 MobiDBLite consensus disorder prediction 486 514 - -
Vimu11g01640 720 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Vimu11g01640 720 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Vimu11g01640 720 SMART c3hfinal6 68 91 IPR000571 GO:0046872
Vimu11g01640 720 MobiDBLite consensus disorder prediction 264 285 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 415 430 - -
Vimu11g01640 720 Pfam RNA-binding, Nab2-type zinc finger 133 153 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 1 33 - -
Vimu11g01640 720 FunFam Zinc finger CCCH domain-containing protein 17 29 92 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 171 285 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 589 617 - -
Vimu11g01640 720 MobiDBLite consensus disorder prediction 374 442 - -
Vimu11g01640 720 ProSiteProfiles Zinc finger C3H1-type profile. 35 64 IPR000571 GO:0046872
Vimu11g01640 720 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 32 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01640 Vimu-Chr11 20421584 20424964 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g01640 zf-CCCH_3 4.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01640 - - gmx:102669253 1085.48