Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01627 ATGCCACAAATAATGAGGTTTTCACCACTTGTAGTTGTGTTGGTTTTCTGTTTTTCTCCTATGCTGGTAGTCTTTGGTCTGGGCTACTCAGATAATACTTTGGGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGAAAGACCCACAAAATGTTCTGAGTGATTGGTCAGAGGATAACATTGAATACTGCAGTTGGAGAGGGGTGTCATGTGAATTGAACTCAGACTCAAACACAATTTCAAACTCTTTAGATGGTAACTCCATGCAAGTGGTGGGTCTTAATCTTTCTGACTCGTCACTCACAGGGTCAGTGTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACGGGTCCCATTCCACCTAATCTCTCCAACCTCACTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATACCCGAAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATTCCCCCGTCTCTCGCCAACCTGGTCAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGGTCTATTCCAAGGCAACTTGGTCAACTCAAACTCATGGAGAATCTGATTCTGCAAGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCGTCTTCACTGCAGCTAACAACAAACTCAATGGATCAATACCCAGTGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGTATATCTGGGGAGATTCCGAGTCAACTCGGTAATATGAGCCAACTCGTTTACCTGAACTTCATGGGGAACCAGTTCGAGGGTACCATTCCTCCATCTCTAGCTCAACTGAGTAATCTTCAAAATCTGGACTTGTCAATGAACAAGCTCAGTGGAGGAATCCCAGAGGAGTTGGGCAACTTGGGTGAGCTGGCTTATTTGGTTCTGTCTGGTAACAACCTTAATGGTGTCATACCAAGGACCATATGTTCCAATGCAACAAGTTTGGAGCATTTGATGTTGTCAGAAAGTGGACTTCATGGTGAGATTCCGGCTGAGTTGAGTCAATGCCAGCAACTGATGCAACTCGATTTGTCCAACAATGCACTCAACGGGTCCATACCTCTTGAGCTTTATGAGTTGCTGCGGTTAACTGATCTCTTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTCCATAGGGAACCTCAGTGGCTTGCAGACACTTGCTTTATTTCACAATAACTTGGAAGGTGTTCTGCCGAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAACCAATTGTCAGGGTCTATACCTACGGAGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTTGGAAACCATTTCAGTGGGGAAATTCCAGTTACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTTGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAGCATTCTAGATTTAGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCAATGAATTACAGCAACTCATGATCTACAACAATTCCCTTGAAGGTAATCTCCCTCACCAACTGATAACCGTAAAAAACTTGACCAGAGTGAATCTTTCTAAGAACAAATTGAATGGTAGTATATCTGCATTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGAGGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTACGATTAGGTAACAACAACTTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTATTAGACCTCTCAGGAAATTCACTCATTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAGCAGTAACTTTCTTTTCGGACAAATGCCATTATGGCTTGGAAGTTTATCTCAGTTGGGAGAGCTCAAACTCTCCTCCAATAATTTTTCTGGGCCACTTCCGTTAAGCCTATTCAAATGTTCTAAGTTGCTTGTTCTGTCTCTAAATGACAACTCCGTGAATGGAACTCTCCCATCTGATATTGGTGAACTTGCAAACCTAAATGTCCTCAGACTTGAGCACAATAAGTTTTCTGGACAGATCCCTGTGGAGATAAGCAAATTGACCAAGCTTTATGAGCTCCGGCTCTCAAGAAATGGATTCAACGGTGAGATTCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAATCTCTCAGGTGTCATCCCACTTTCTCTTGGGAAACAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCAACTAACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGAAAGCTTGACCTCTCTTACAACAACCTTCAAGGAAAATTGGATAAGCAGTTTTCCCGTTGGCCAGACCAGGCATTTGAAGGAAACATACATCTTTGTGGAAGCCCTCTTGGGAGCTGCCACAGAAATGACGACTCCGAAAATGCAGGCCTGAATGAATCAACAGTGGTGATAATCTCTTCCCTTTCAACTTTCGCTGCAATTGCACTTCTGATACTCGCAGTCCGAATCTTTTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGTGAAGTGAATTATGTTTACTCCTCTTCTTCATCACAAGCACAGAGAAGACCACTGTTCCAACTAAATGCAACTGGAAATAGAGATTTCAGATGGGAAGACATCATGGATGCTACGAACAATCTAAGTGAGGACTTCATGATTGGCTCAGGCGGCTCAGGGAAAATCTACAAAGCTGAATTGCCATCTGGAGAGACTGTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGACACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAACAGAAACAAAGAAGCAGGTTGGAATCTGTTGATATATGATTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCAGCCAAGGAGAGCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTGGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAATGTATTGCTAGACTCAAAAATGGAGGCGCACTTGGGAGATTTTGGACTGGCAAAAGCACTAACCGAGAATTATGACTCTAATACTGACTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCACAACAGGCAGCAGAAAAAAGTGACGTTTACAGCATGGGAATAGTGCTGATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATTTTTGGAGCTGAGATGAACATGGTGAGATGGGTAGAAATGAACGTGGATATGCATGGTTTTACCAGTGAGGAACTGATAGATCCTGAACTGAAACCTCTTTTACCTGACGAAGAGTTTGCTGCATTCAAAGTGCTTGAGATAGCCTTGCAATGCACGAAAGCTACACCACACGAGAGGCCATCTTCGAGGAAAGCATGCGACCTTCTCCTCCATGTATTCAACAACAGGATGCTGAACTTTGAGAAGATGAATTTGGAGCATTGCAAATGA 3819 0.4334 MPQIMRFSPLVVVLVFCFSPMLVVFGLGYSDNTLGVLLEVKKSFVKDPQNVLSDWSEDNIEYCSWRGVSCELNSDSNTISNSLDGNSMQVVGLNLSDSSLTGSVSPSLGRLQNLLHLDLSSNSLTGPIPPNLSNLTSLESLLLFSNQLTGHIPEEFGSLKSLRVMRLGDNALTGTIPPSLANLVNLVNLGLASCGLTGSIPRQLGQLKLMENLILQDNELMGPIPTELGNCSSLTVFTAANNKLNGSIPSELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNFMGNQFEGTIPPSLAQLSNLQNLDLSMNKLSGGIPEELGNLGELAYLVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLELYELLRLTDLLLNNNSLVGSISPSIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGSIPTEIGNCSSLQMIDFFGNHFSGEIPVTIGRLKELNFLHLRQNELVGEIPATLGNCHKLSILDLADNQLSGAIPATFGFLNELQQLMIYNNSLEGNLPHQLITVKNLTRVNLSKNKLNGSISALCSSQSFLSFDVTDNEFEGEIPSQMGNSPSLERLRLGNNNFSGEIPRTLGKIRELSLLDLSGNSLIGPIPAELSLCNKLAYIDLSSNFLFGQMPLWLGSLSQLGELKLSSNNFSGPLPLSLFKCSKLLVLSLNDNSVNGTLPSDIGELANLNVLRLEHNKFSGQIPVEISKLTKLYELRLSRNGFNGEIPAEIGKLQNLQIILDLSYNNLSGVIPLSLGKQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDLSYNNLQGKLDKQFSRWPDQAFEGNIHLCGSPLGSCHRNDDSENAGLNESTVVIISSLSTFAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSQAQRRPLFQLNATGNRDFRWEDIMDATNNLSEDFMIGSGGSGKIYKAELPSGETVAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNLLIYDYMENGSVWDWLHGKPAKESKVKRSLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTDSNSWFAGSYGYIAPEYAYSQQAAEKSDVYSMGIVLMELVSGKMPTNEIFGAEMNMVRWVEMNVDMHGFTSEELIDPELKPLLPDEEFAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMLNFEKMNLEHCK 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01627 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 927 1046 - -
Vimu11g01627 1272 ProSiteProfiles Protein kinase domain profile. 966 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01627 1272 SMART LRR_typ_2 496 520 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 424 447 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 255 279 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 111 134 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 159 183 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 832 863 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 135 158 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 783 807 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 687 711 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 303 326 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 448 472 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 327 351 IPR003591 -
Vimu11g01627 1272 SMART LRR_typ_2 735 759 IPR003591 -
Vimu11g01627 1272 SUPERFAMILY RNI-like 90 390 - -
Vimu11g01627 1272 Gene3D Ribonuclease Inhibitor 292 398 IPR032675 -
Vimu11g01627 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 587 879 - -
Vimu11g01627 1272 SUPERFAMILY Protein kinase-like (PK-like) 948 1252 IPR011009 -
Vimu11g01627 1272 Gene3D Ribonuclease Inhibitor 399 569 IPR032675 -
Vimu11g01627 1272 ProSitePatterns Protein kinases ATP-binding region signature. 972 995 IPR017441 GO:0005524
Vimu11g01627 1272 Gene3D Phosphorylase Kinase; domain 1 925 1046 - -
Vimu11g01627 1272 FunFam Uncharacterized protein 396 489 - -
Vimu11g01627 1272 SMART serkin_6 966 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01627 1272 PANTHER UNNAMED PRODUCT 544 1181 - -
Vimu11g01627 1272 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Vimu11g01627 1272 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 204 - -
Vimu11g01627 1272 PRINTS Leucine-rich repeat signature 114 127 - -
Vimu11g01627 1272 PRINTS Leucine-rich repeat signature 303 316 - -
Vimu11g01627 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 296 395 - -
Vimu11g01627 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1097 1109 IPR008271 GO:0004672|GO:0006468
Vimu11g01627 1272 FunFam Leucine-rich repeat receptor-like protein kinase 1047 1269 - -
Vimu11g01627 1272 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 209 280 - -
Vimu11g01627 1272 SUPERFAMILY L domain-like 349 676 - -
Vimu11g01627 1272 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 490 586 - -
Vimu11g01627 1272 SMART LRR_sd22_2 111 137 - -
Vimu11g01627 1272 SMART LRR_sd22_2 303 329 - -
Vimu11g01627 1272 SMART LRR_sd22_2 400 426 - -
Vimu11g01627 1272 SMART LRR_sd22_2 448 474 - -
Vimu11g01627 1272 SMART LRR_sd22_2 255 281 - -
Vimu11g01627 1272 Gene3D Ribonuclease Inhibitor 190 291 IPR032675 -
Vimu11g01627 1272 Gene3D Ribonuclease Inhibitor 34 189 IPR032675 -
Vimu11g01627 1272 SUPERFAMILY L domain-like 593 850 - -
Vimu11g01627 1272 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Vimu11g01627 1272 Pfam Protein kinase domain 971 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01627 1272 Gene3D Transferase(Phosphotransferase) domain 1 1047 1269 - -
Vimu11g01627 1272 Gene3D Ribonuclease Inhibitor 584 884 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01627 Vimu-Chr11 20219114 20223035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01627 36 712 Receptor kinase-like Gene Family AT1G17750 36.603 2.08e-102 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu11g01627 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01627 - - gmx:100801889 2104.72