Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01625 ATGGGTTTAGCGGCACCTTATTCCGTTGGAACAAGCCTCCCCTCCCTCCAACGCCTTCCTTCCCTGAAACCCCAAATCTGTAACAATTATTCATCACCTGTTAGTTCCCATCGTCATGTGAAATGTGCTCTCCAACTTCAACCACAAACACCACCACCAACAACAACTGTAACAGTGGCACCGGACGAGAGCCTCGTGAAGAGAAGAACTGTCATAGGCCTTTTTGCATTTGATGCTGTTCTTGCTTATTCTTCCTTAAATTCATCATCAGCAGCTGAAACTCCATGTGAATTTCAAGTGGCACCTTCTGGTCTTGCCTTCTGTGATAAACTTGTGGGAGCAGGTTCTCAGGCAGTCAAGGGACAACTTATTAAGGCGCATTATGTGGGGAGATTGGAGAATGGGAAAGTTTTTGACAGCAGCTATAATCGTGGCAAGCCACTAACGTTTCGCGTTGGTGTTGGAGAGGTGATTAAAGGTTGGGATGAAGGCATTATTGGAGGTGATGGAGTTCCTCCCATGCTTGCAGGAGGGAAACGTACCCTGAAGATTCCTCCAGAACTTGGATATGGCTCAAGAGGAGCTGGTTGTCGAGGAGGCAAGTACTTCTTTCCTTTTGTTCATGTATCATTCCTCCTGATTCAGTGCTATTGTTCGATGTGGAGTTCGTTAGCCAAGCATGATTTACAAAGCCATGAGCGGGAAAGTTTCCATATAGTGGAAATTCTAAAATTAAATGTTAAAGTTGAACTTGCTGGAGAAATTCATAACTAA 774 0.447 MGLAAPYSVGTSLPSLQRLPSLKPQICNNYSSPVSSHRHVKCALQLQPQTPPPTTTVTVAPDESLVKRRTVIGLFAFDAVLAYSSLNSSSAAETPCEFQVAPSGLAFCDKLVGAGSQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDEGIIGGDGVPPMLAGGKRTLKIPPELGYGSRGAGCRGGKYFFPFVHVSFLLIQCYCSMWSSLAKHDLQSHERESFHIVEILKLNVKVELAGEIHN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01625 257 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 121 205 IPR001179 GO:0003755
Vimu11g01625 257 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 90 204 IPR044183 GO:0009507
Vimu11g01625 257 FunFam Peptidylprolyl isomerase 93 216 - -
Vimu11g01625 257 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 117 195 IPR001179 GO:0003755
Vimu11g01625 257 SUPERFAMILY FKBP-like 97 197 - -
Vimu11g01625 257 Gene3D - 92 207 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01625 Vimu-Chr11 20187341 20192558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01625 121 195 Calmodulin-binding Proteins AT5G48570 45.333 6.69e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01625 K01802 - gmx:100778390 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01625 11 20187341 20192558 Vimu11g01625 11 20187341 20192558 ECH