Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01615 ATGGAAAAACAGGTGATGGCTTTTAAAGGCTGCTATCGTCGAGTATATACTGATATAAACTTTATTTTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGCTTTGACTAAGAAAGAGTTTGTGCCTTTTCTTCATCGAGAAATCAGTGTAATATCGAGGAGAAACGCAACTCACAGAAGTGCATTAGCTCTTCACAAAGGTGGTCAAAGGAGAACCAAGTATAAGACCATTTATTGGGAAAGACTGGGTGGCGAAAGGAAGACGGTAATGTGGTCGTTGGAGGTGGTCGAGGAGGATGTAGCAATGGTGTGTGTTGTCAGAACTGCAAGAACGGTTAAGAACAAAGGCAAGGAATTTTGGGGTTGCCCTAAGTTCAAGAATGGTGGTGAAGGTGGTGGTTGCAATTATTTCAAATGGTGTGCAGATCATGGGGTTGTTGAAACGGAAACGAGTGCAAAGTGTGAAGGCAAGTGTGAGTCTTTCTTGAAGAGAGAAGCAATGGAAGATGGATGGAAGATTAAATCTGATTTGGACTTGTCAGTGAAGAAATTGGAAAATAGGCTTAACATTGTTTTAGGGATTGGCAATGGCATTAGATGGGAAAATAGTGGAGCAGATGTGATGTGA 630 0.4143 MEKQVMAFKGCYRRVYTDINFILRDYEEDLKQMRALTKKEFVPFLHREISVISRRNATHRSALALHKGGQRRTKYKTIYWERLGGERKTVMWSLEVVEEDVAMVCVVRTARTVKNKGKEFWGCPKFKNGGEGGGCNYFKWCADHGVVETETSAKCEGKCESFLKREAMEDGWKIKSDLDLSVKKLENRLNIVLGIGNGIRWENSGADVM 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01615 209 Pfam GRF zinc finger 104 142 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01615 Vimu-Chr11 19961313 19963713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01615 12 70 AP2-EREBP Transcription Factor Family AT2G28550 47.458 7.20e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01615 K09284 - var:108336035 166.777