Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01614 ATGAGTGATTCAGATCGTGATCAACAAAGTATTTATCATTGCCGTCATCGTCATGATCCAGAAACAATAGCTAGACTCGAAGAAATCTTCAAAGAATGCTCACATCCGGACGAAACACGACGCCGTCAAATAGGAGAGGAGCTCGGGCTTGATGCTAAACAAGTAAAGTTTTGGTTTCAGAACAAGAAGACACAGTTAAGGACCAAAAGTGAGCGATTAGATATCAATGCTCTTCGTCTTGAGAATGAAAGAATACAATCGGAAAACCGTATCATGAGTGAGACTTTGAAGACCATAGCATGCGCAACATGTGGAGGTCGATCCATGAGACAAGAACAGAGAGAACTTTATTTGCAAATCTTGAAGTGTGAGAGAGTAGTTTCATTTATGGCAAACAACGGGATCAACCCAGAACTCCTTCCGGCTGTTCCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTGATACCTTTCGAGCAACTTTGCTAAATCAAACGGTTGGAACTTCAGGAAATCAACTCACTCCTAATCATGAAGAGTATTTTCCTTCCCCTTCTCAACATGATATTCCAGCAGTTAATCAAGATATTTTTAATCATGGTCATAATCAAGAAATTCCTGATCTTGCACTTGATCAACATGTTTCTTCTCTTACTCTTACTGTTACTTCTCCTGCCACTGTCGATCCCTTTCCCAGTCTAGATGACCCTCTTTTGATTTCATGTCTTGAATATAATATTCCAGCTTTGGTTACTGCTCTTGATCAAAATATTCTCACACTGGCTTCTACTCGTAATCATAATAATATTAACCTTGATGTTGTCGAGAAACAAAGCCAAGGACTTAATCCATGTCTAAACGTTCCTTCTGTTACTCCTACCCTTGATCAAGATAATCCACATCCTGGTCAAGACATTTCGTCCATTCTTCAGGATCATACGCCATCTCTTGATCTTGATCTGGATGCGATGCTTCAAATTTTGAACAGCGATGTGGTATCCCAACCGAAGACCAGCGAAAATAAAGATACGGAATATGAAAGAATGTTGAAGATTGCGAATAATGCGATGGAAGAGTTGATGAAACTCTTAAGTATGAACGAACCCTTCTGGTTCAGGTCTCTTGTGGATGAGAGATTCGTTCTTCAGCGTGATTGCTACCAAAGGATTTTTCAAAGGAGTAATAGCTTAAACGGACCTCATGCTCGAGTAGAGTCTTCCAAAGATTCACGAGTGGTGAAAATGAGTGGGACAGAGCTTGTGGAAATGTTTTTAAATTCGGACAAATGGGTTGATCTATTCCCAACAATTGTTAAAAAAGCTGAAACAATTGAAGTACTCGAAAGTGGTTCGTTAGGAAATAGAAATGGAGCTTTGCAGTTGATGAACGCAGAAATGCACATTCTTTCACCTTTGGTTCCAACTCGTGAATTCCGCTTCCTTCGTTATTGTAAACAAATCGAAGCAGGTGTATGGACCATAGGGGATGTGTCGATTGATTCTTCGACACACAAAATCTCTAATGTTTCTAGCTCTCGGAGGCTTCCATCTGGATTGCTGATTCAAGAAATTGCTGATGGATTATGCAGGGTTTCTTGGGTGGAGCATGTGGAAGTGGATGATAAGATCCAAATTCACCATCTTTTTAGAGATCTTATTTGTGGCAATAATGCGTATGGAGCAGAAAGATGGATTTTGGCACTTGAAAGAATGTGTGAGAGAATTGCAAGTGCCTCAGCAGAAACCATACCTAGTTGTGACGTTGGAGGAGTGATTAGGTCACCTGACTCAAGGAGGAATATATTGCGCCTGACTCGTCGTATGGTGAAATCTTTCTGTGAGAGTTTGTGCATGAAAGATAACACAAGCTTCCCACACCTAACCAGGATGAACAATGGCGCCATTAGAGTTGCTATTCGAGTGAACATGAACGAGCTAGGTGAGCCTAAAGGCATGGTTCTCAGTGCAGCTACCTCCTTTTGGCTTCCTATCTCTCCACAAGATATTTTTGACTACTTGATAGATGACAGAAAACGAGCCAAGTGGGATGTTCTATGCTCTGGAAATGCAGGGCACGAGATTCAACGCATCACAACAGGTAGTAATCCTGGAAACTGTGTTTCAATCATGCGGCCTTTCATCCCTAAAGAGAACAATATAGTGATTCTCCAAGAAAGTTATGTAGATGCTTTGGGATGTATGATGTTATACGCTCCTTTTGATATGAAAGCATTGAACTACGTCATGAATGGAGAAGACACGTCACTGTTTCCGATTCTTCCCTCTGGCTTCACCATATCAAGGGATGCCAAACCAGATGTTCCTGCAGTACAATCTGGAGAAGTTGGCAAATCAGGAGGTTCGTTGGTCACTCTAATGTTTCAAATTTTGGCTTCTAGTCCATCTAGAATGAGCATGGTAGACATCGAATTCGTAAGTAATGTTAATGCACTTGTGACTTCAACAATAGAGAATATTAAAGATGCTTTGAATTGTTCCCATTCAAAGTAA 2514 0.4065 MSDSDRDQQSIYHCRHRHDPETIARLEEIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLRTKSERLDINALRLENERIQSENRIMSETLKTIACATCGGRSMRQEQRELYLQILKCERVVSFMANNGINPELLPAVPSTSSSSSSSSSLDTFRATLLNQTVGTSGNQLTPNHEEYFPSPSQHDIPAVNQDIFNHGHNQEIPDLALDQHVSSLTLTVTSPATVDPFPSLDDPLLISCLEYNIPALVTALDQNILTLASTRNHNNINLDVVEKQSQGLNPCLNVPSVTPTLDQDNPHPGQDISSILQDHTPSLDLDLDAMLQILNSDVVSQPKTSENKDTEYERMLKIANNAMEELMKLLSMNEPFWFRSLVDERFVLQRDCYQRIFQRSNSLNGPHARVESSKDSRVVKMSGTELVEMFLNSDKWVDLFPTIVKKAETIEVLESGSLGNRNGALQLMNAEMHILSPLVPTREFRFLRYCKQIEAGVWTIGDVSIDSSTHKISNVSSSRRLPSGLLIQEIADGLCRVSWVEHVEVDDKIQIHHLFRDLICGNNAYGAERWILALERMCERIASASAETIPSCDVGGVIRSPDSRRNILRLTRRMVKSFCESLCMKDNTSFPHLTRMNNGAIRVAIRVNMNELGEPKGMVLSAATSFWLPISPQDIFDYLIDDRKRAKWDVLCSGNAGHEIQRITTGSNPGNCVSIMRPFIPKENNIVILQESYVDALGCMMLYAPFDMKALNYVMNGEDTSLFPILPSGFTISRDAKPDVPAVQSGEVGKSGGSLVTLMFQILASSPSRMSMVDIEFVSNVNALVTSTIENIKDALNCSHSK 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01614 837 Gene3D - 2 81 - -
Vimu11g01614 837 CDD homeodomain 15 70 IPR001356 GO:0003677
Vimu11g01614 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 832 IPR042160 -
Vimu11g01614 837 CDD START_ArGLABRA2_like 349 574 - -
Vimu11g01614 837 Coils Coil 63 95 - -
Vimu11g01614 837 SUPERFAMILY Bet v1-like 346 577 - -
Vimu11g01614 837 SUPERFAMILY Homeodomain-like 5 71 IPR009057 -
Vimu11g01614 837 ProSiteProfiles 'Homeobox' domain profile. 15 69 IPR001356 GO:0003677
Vimu11g01614 837 Pfam START domain 353 575 IPR002913 GO:0008289
Vimu11g01614 837 SMART START_1 352 575 IPR002913 GO:0008289
Vimu11g01614 837 SMART HOX_1 9 73 IPR001356 GO:0003677
Vimu11g01614 837 SUPERFAMILY Bet v1-like 631 825 - -
Vimu11g01614 837 Pfam Homeodomain 15 67 IPR001356 GO:0003677
Vimu11g01614 837 ProSiteProfiles START domain profile. 343 578 IPR002913 GO:0008289
Vimu11g01614 837 Gene3D - 351 550 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01614 Vimu-Chr11 19947493 19953610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01614 314 833 Homeobox Transcription Factor Family AT1G17920 43.396 6.50e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g01614 START 2.7e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01614 K09338 - gmx:100783586 926.776