Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01610 AGAGCAATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGAAGAAAGTGTAGCCTCTCTAAAGGATAACTTCCCTCAAACTCTTGCAGACCCTCTAATTCCATCATCACCTATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCACAATCTGCAACACCAAGATATCTCCACCTATGCAAGTGGAATCACTCCCACATCTGCTAGTGACATCCCTCATTCTCAACAACATCTTTGTTTGAACATGGGAAACTCCTACATCAACAACACCAGCAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAGTCCACTTGGGACCCTACTACTGTTCAGGAATTGCCAGACATAGCCTATGCTAATCAAATAGAACAGCAACAAAATGAACAACAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTTCAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCCCATCTTTGCACACCAATCCCACCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGACCTTTCTTGGAGACCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTGTTCCACCTTAACCTTCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTACCCCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGACGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTCAATGGAAAATACAAAATCTTAAGAAATCTTATACCAAACCCCACCAAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTGATTAGAACAGTGAATGAACTCAAACTATTGGTTGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGGTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGCGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGATAATTGAAGGTTCCTCAGTCTATGCAAGTGCCATAGCCAACAGGGTCATCGATGTTTTGGACTGTCAGTACACAGCATCAGTTCCACATACAAACAGCTACTAG 1554 0.4479 RAMSTGDRPKMHEQTGCFDPNTMEESVASLKDNFPQTLADPLIPSSPMVVDNTTNTDNGLEENLRLSVEELSFNHHNLQHQDISTYASGITPTSASDIPHSQQHLCLNMGNSYINNTSNMDNHLVQQVIDVLPYQQSTWDPTTVQELPDIAYANQIEQQQNEQQFQQMETQNCSQSFNPSSILDPPYPSPDLLNLLHLPRCSAPSLHTNPTICLTNPTQNTPNFQNPLTFLGDLPIGSDNNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGDEIEGDGSQLDMGVLEFNRVTPTVAKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDGAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNSY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01610 517 Gene3D - 317 390 IPR036638 GO:0046983
Vimu11g01610 517 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g01610 517 SMART finulus 325 374 IPR011598 GO:0046983
Vimu11g01610 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 386 IPR036638 GO:0046983
Vimu11g01610 517 CDD bHLH_AtMYC1_like 324 388 IPR045896 -
Vimu11g01610 517 Pfam Helix-loop-helix DNA-binding domain 322 368 IPR011598 GO:0046983
Vimu11g01610 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Vimu11g01610 517 PANTHER TRANSCRIPTION FACTOR BHLH91 10 509 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01610 Vimu-Chr11 19864268 19866329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01610 11 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 35.846 7.47e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g01610 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01610 - - gmx:100782512 833.172