Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01584 ATGGCCGAAACTAACTCTGAGTCTCCTACACCTTCGTCCTTTGGCCCCATGAGAAGCACACCATGTGATGACCAAGTTGGTGGGTTTGATTGGATGGTCCTTGTGGCAGTAATTGTATGTGCCTTGGTGTGTGCTCTTGGCCTGAACACGATGCTGCAATGTGTATTCCAATGTGCTTCTCGTGTTCTGACGCAACCTCGCCAATGGATGGCTTCTCGCAGGCTTAATTCTGGTCTGAAGAGGAAGGAAATGGTGGCTTTGCCAACTTCAACCTTCACAAACTCTCCCTCTCCATCTTCACCTTCTACCTGTGTCATTTGCTTGGCTGAATTCTGTGATGGAGACCCTATAAGGTTCCTCCCAAACTGCAACCACTTTTTCCATGTTCTTTGCATTGACAAGTGGCTCCTCTCTCACTCTTCTTGCCCTACTTGCAGACACCTACTCAACCCAAATCATCACCATCTTCACTCCTTACATACTGTTATAACACCTTAG 498 0.4739 MAETNSESPTPSSFGPMRSTPCDDQVGGFDWMVLVAVIVCALVCALGLNTMLQCVFQCASRVLTQPRQWMASRRLNSGLKRKEMVALPTSTFTNSPSPSSPSTCVICLAEFCDGDPIRFLPNCNHFFHVLCIDKWLLSHSSCPTCRHLLNPNHHHLHSLHTVITP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01584 165 PANTHER RING-H2 FINGER PROTEIN ATL78 8 151 IPR044602 GO:0016567|GO:0016740
Vimu11g01584 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Vimu11g01584 165 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vimu11g01584 165 SMART ring_2 104 145 IPR001841 -
Vimu11g01584 165 SUPERFAMILY RING/U-box 103 152 - -
Vimu11g01584 165 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01584 Vimu-Chr11 19218007 19219018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01584 7 149 C3H Transcription Factor Family AT3G10910 36.424 6.83e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01584 - K19040 gmx:100779286 218.394