Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01505 ATGGAAGGAAAACTGATCAAACAAAAACAAAAACAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTTCTCATTACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAACTGGTTTAGTTATGGAGAACCTTCTCACCAAGCAATGATAGTTTCTAGTGATAAACAAAACCTTTCAAAAGATAACATTAATCTTGTGGAGGATCAAACAAAATTAGAGATAGATGAACTTTGTGCAAAAAATAAGAGACTTATAGATCAAATGCACTATGAGGAAGAACGGGAGAAAGAACTTACAGAGATTATGAAGACAAGAAATGTTCATGGTTGGTGGGAGGCCAAAGATCTTGATCATGAACAGGCTAAAGAAATGAAGGCTTCTTTGATGGAACTCAAACAAAAATTGGAAAATGAACTTTCTATCAAGTGTGGAGAGAAAGATAAGTCTTCTCATGCTCCTCCAAATCAAGTGAATGGATTCAATTTTTGTCCTAATTACACAAAAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCCAATAATGGAATTGCTGCAATTGAAAGTAATCTTCCTGATATTTCTTTTAGTCCCATAGACGAAGGGAAAGACTTCAAATTTTTTCCATATGGTGAACGTAGGGAAGATTTGTTTGATATTGTTTATCCTGACAAATATCTCTATCATGGATATAGTTTTTTTGTTGATGATAGTGGTTCTACTTTTGCTTCTTTTCCTGCAAAACAAGTTCAAGGACTTAACCCTAATGATGGAAATGGAAGTACTAGTAATGAGAATGGTGGTGAAAATGATAGTTGTGCTCTGCTCTCCTCCTCCCATTTGAATGAACAACAGGAGACTAACCTGTTTATGGACATTGAAAATGAGCTAAGAGATGATTTTTCTTTTCCTCCATTTCCATGGTCTTAA 999 0.3473 MEGKLIKQKQKQKREIKKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSHQAMIVSSDKQNLSKDNINLVEDQTKLEIDELCAKNKRLIDQMHYEEEREKELTEIMKTRNVHGWWEAKDLDHEQAKEMKASLMELKQKLENELSIKCGEKDKSSHAPPNQVNGFNFCPNYTKGSSISEVVFGANNGIAAIESNLPDISFSPIDEGKDFKFFPYGERREDLFDIVYPDKYLYHGYSFFVDDSGSTFASFPAKQVQGLNPNDGNGSTSNENGGENDSCALLSSSHLNEQQETNLFMDIENELRDDFSFPPFPWS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01505 332 PANTHER MADS BOX PROTEIN 11 162 - -
Vimu11g01505 332 Coils Coil 142 165 - -
Vimu11g01505 332 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vimu11g01505 332 SUPERFAMILY SRF-like 11 74 IPR036879 GO:0003677|GO:0046983
Vimu11g01505 332 MobiDBLite consensus disorder prediction 275 297 - -
Vimu11g01505 332 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vimu11g01505 332 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vimu11g01505 332 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vimu11g01505 332 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vimu11g01505 332 Coils Coil 2 22 - -
Vimu11g01505 332 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Vimu11g01505 332 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01505 Vimu-Chr11 17924608 17925892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01505 7 166 Type I MADS-box Gene Family AT1G28450 34.884 3.86e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g01505 SRF-TF 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01505 - K12412 ccaj:109813207 319.701