Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01485 ATGATGCTCACCCTAAAGATTAGTTTGACTACAGTCGTTGTCCTTTCCATTGTATCCATAGTTTCCCATGCTGAAACAAGCTTGGAGGTTGAAATTGAAGCCTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAGTGGGGCTCTAGCAGACTGGGTAGACAGTCGGAACCACTGCAATTGGTCTGGCATTGCATGTGACCCATCTTCAAATCATGTCATTTCTATTTCTCTAGTTAGTCTTCAACTCCAAGGGAAGATTTCACCTTTCCTTGGTAACATTTCAGGCCTTCAGGTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTGAACTCGGTCTTAATACTCAACTTACACAACTCACTCTTGTTGACAATTCTCTCTCAGGTCCTATCCCTCCACAATTAGGTAGCCTTAAAAGCCTGCTGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCCGAGAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTGATTTCAACAATCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAACCTTGTACAGATTGCAGGTTTTGGAAATAATTTGGTAGGATCTATACCTCTTTCCGTAGGTCAGTTAGGAGCTTTGCGAGCTCTTGATTTTAGCCAAAACAAGTTGTCAGGTGTAATACCTCGAGAGATTGGAAACCTGACAAAATTAGAGTACCTTGAATTGTTCCAAAATTCCTTGACTGGGAAAATTCCTTTTGAGCTTGGTAAGTGTAGCAATCTTTCAAGCCTTGAGTTATCTGATAATCAGCTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTGAAGTTGGAGAAATTGAAGTTACACAAGAATAACTTGAATTCCACCATCCCTTCAGCCATATTCCAGTTGAAATCATTAACACATCTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCTGAGATTGGATATATGAACTCCTTGCAGGTTCTAACCCTGCATTTAAATAAGTTAACTGGGGAGATCCCTTCATCAATAACAAAATTGACAAACTTGACATATTTGTCAATGAGCCAGAATCTACTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCGTAATTTGCAGTTTCTTGTTTTGAACGCAAACCACTTTACTGGATCCATCCCGCCTAGCATTACCAATTGTACTAGACTGGTAAATGTAAGTTTGTCTTTTAATGCTTTAAGTGGTAAAATTCCTGAGGGTTTTTCCAGGTCACCAAATCTTACTTTCCTCTCTCTTGCATCCAACAAAATGACTGGGGAAATCCCGGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAATAACTTCAGTGGATTGGTAAAACCAGGTATCCAAAACCTGTCTAAACTTCAACGCCTACAGTTGAATGTAAATTCTTTCACAGGACCAATTCCACCTGAGATTGGAAACTTGAATCAACTCATTACTCTATCCCTCTCTGAAAATAAGTTTTCAGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCGCCTTCAGGGGCTCACTCTTCATGCCAATTTATTAGAAGGTACAATACCTGATAAGCTCTCCGAATTAAAAGGACTAACCGAACTTTTCCTGCATCAAAATAAGTTGGTTGGGCAAATACCTGATACTCTCTCAAAGCTTGAGATGCTTTCCTTCCTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGAAGCTAAATCAACTTTTAGTTTTGGATCTCTCTCACAACCAGCTTACAGGATCAATTCCTGGTGATGTCATTGCAAACTTAAAAAGCATGCAGATGTATCTCAACCTTTCTTACAACCACTTGGTCGGAAATGTTTCAACTGAGTTGGGCATGCTGGAAATGATACAGGCTATTGACATTTCAAACAATAATCTTTCGGGTTTCATTCCCAAAACACTTGCTGGGTGCAGAAATCTGTTTAATCTTGATTTTTCAGGAAACAGTATTTCAGGTCCTATTCCCGTAGAAGCGTTTAATCACATGGACTTGCTTGAAAGCTTAAACCTCTCAAGGAACCATTTTGATGGTGAAATCCCTGATATACTGGCAGAACTTGATCATCTTAGTTCCCTAGATCTTTCTCAGAATGACTTGAAGGGAATTATTCCTGAGGGCTTTGCCAACCTTTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCTGTTCCTAAGACCGGAGTGTTTGCACAAATCAATGCATCTAATGTGATGGGAAACCAGGATCTTTGTGGAGCTCAGTTCCTACCGCCATGCAGGAAGACAAAACACTCACTTTCCAAGAAGGGCATAATTATTATTGCGTCACTTGGATCTCTAGCTATACTTCTAGTGGTAATGATTCTAATTCTCACTCGTGGCACCAAACTCTGCAATTCTAAAGAAAGAGACAGCAGTGTAAATCATGAACCAGACTTCAATTCAGCATTGGCACTTAAAAGGTTCAGTACAACGGAATTGGAGAATGCCACTAGATTTTTCAGTGCGGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCAGGTTGTTGCCATAAAAAGGTTGAATTTGCAACAATTCTCTTCCAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGTTGAGACATAGGAATTTGATCAAAGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTGGAGTACATGAAAAATGGAAATTTGGATAGCATCATACATGGCAACGAGGTAGATCAGTCTGTGATCTCTAGGTGGACATTATCTGAACGAGTCCGAGTCTTCATATCTATTGCTGAAGCATTGGATTATTTGCACTCGGGTTATCATATTCCCATTGTGCACTGTGATTTAAAGCCTTCCAACATTCTTCTAGATAGAGACTGGGAAGCTCATGTCAGTGACTTTGGCACAGCTCGAATACTTGGTCTTCATCTACAAGAAGGTAGTACCCTTTCGTCGTCAGCAGCTGTGCAAGGCACAGTTGGCTACATGGCACCAGAATTTGCCTACACGAGGAAAGTGACAACTAAAGCAGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTCCTAACCAAAAGAAGGCCGACAGGACTCTCGGAAGAGAATGGTTTGCCAATCACTTTGCGTGAATTAGTGGCAAAAGCCCTTGCAGATGGCACAGAACAACTTATGAATGTTGTGGATCCTTTGTTGACCTGGAATGTAACAAAAGACTATGATGAAGTGTTGGCAGAGCTCTTCAAGCTATCTCTGTGCTGCACCATACCTGAGCCTGAACAGAGACCCAATATGAATGAGGTGTTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGCTAA 3495 0.4097 MMLTLKISLTTVVVLSIVSIVSHAETSLEVEIEALKAFKNSITGDPSGALADWVDSRNHCNWSGIACDPSSNHVISISLVSLQLQGKISPFLGNISGLQVFDITSNSFTGYIPAELGLNTQLTQLTLVDNSLSGPIPPQLGSLKSLLYLDLGNNFLNGSLPESIFNCTSLLGIAFDFNNLTGRIPSNIGNLVNLVQIAGFGNNLVGSIPLSVGQLGALRALDFSQNKLSGVIPREIGNLTKLEYLELFQNSLTGKIPFELGKCSNLSSLELSDNQLIGSIPPELGNLVKLEKLKLHKNNLNSTIPSAIFQLKSLTHLGLSQNNLEGTISSEIGYMNSLQVLTLHLNKLTGEIPSSITKLTNLTYLSMSQNLLSGELPSNLGVLRNLQFLVLNANHFTGSIPPSITNCTRLVNVSLSFNALSGKIPEGFSRSPNLTFLSLASNKMTGEIPDDLYNCSNLSTLSLAMNNFSGLVKPGIQNLSKLQRLQLNVNSFTGPIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSRLQGLTLHANLLEGTIPDKLSELKGLTELFLHQNKLVGQIPDTLSKLEMLSFLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQLTGSIPGDVIANLKSMQMYLNLSYNHLVGNVSTELGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNSISGPIPVEAFNHMDLLESLNLSRNHFDGEIPDILAELDHLSSLDLSQNDLKGIIPEGFANLSNLVHLNLSFNQLEGPVPKTGVFAQINASNVMGNQDLCGAQFLPPCRKTKHSLSKKGIIIIASLGSLAILLVVMILILTRGTKLCNSKERDSSVNHEPDFNSALALKRFSTTELENATRFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSSNTDKIFKREANTLSQLRHRNLIKVLGYAWESGKMKALVLEYMKNGNLDSIIHGNEVDQSVISRWTLSERVRVFISIAEALDYLHSGYHIPIVHCDLKPSNILLDRDWEAHVSDFGTARILGLHLQEGSTLSSSAAVQGTVGYMAPEFAYTRKVTTKADVFSFGIIVMEFLTKRRPTGLSEENGLPITLRELVAKALADGTEQLMNVVDPLLTWNVTKDYDEVLAELFKLSLCCTIPEPEQRPNMNEVLSALVKLQTTLSC 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01485 1164 SUPERFAMILY RNI-like 201 493 - -
Vimu11g01485 1164 FunFam Leucine-rich repeat receptor-like protein kinase TDR 554 794 - -
Vimu11g01485 1164 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Vimu11g01485 1164 FunFam Inactive leucine-rich repeat receptor-like protein kinase 448 546 - -
Vimu11g01485 1164 SUPERFAMILY Protein kinase-like (PK-like) 841 1155 IPR011009 -
Vimu11g01485 1164 SMART serkin_6 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01485 1164 SMART LRR_typ_2 551 575 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 599 623 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 503 527 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 359 381 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 143 167 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 287 311 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 722 745 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 383 407 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 215 239 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 698 721 IPR003591 -
Vimu11g01485 1164 SMART LRR_typ_2 746 771 IPR003591 -
Vimu11g01485 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Vimu11g01485 1164 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Vimu11g01485 1164 PRINTS Leucine-rich repeat signature 602 615 - -
Vimu11g01485 1164 PRINTS Leucine-rich repeat signature 722 735 - -
Vimu11g01485 1164 Gene3D Ribonuclease Inhibitor 505 796 IPR032675 -
Vimu11g01485 1164 Gene3D Ribonuclease Inhibitor 265 427 IPR032675 -
Vimu11g01485 1164 SUPERFAMILY L domain-like 57 231 - -
Vimu11g01485 1164 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Vimu11g01485 1164 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515
Vimu11g01485 1164 Pfam Leucine rich repeat 701 759 IPR001611 GO:0005515
Vimu11g01485 1164 Gene3D Ribonuclease Inhibitor 428 504 IPR032675 -
Vimu11g01485 1164 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Vimu11g01485 1164 CDD STKc_IRAK 873 1158 - -
Vimu11g01485 1164 PANTHER UNNAMED PRODUCT 452 1081 - -
Vimu11g01485 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 827 945 - -
Vimu11g01485 1164 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 180 432 - -
Vimu11g01485 1164 ProSiteProfiles Protein kinase domain profile. 867 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01485 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 946 1163 - -
Vimu11g01485 1164 Pfam Protein kinase domain 869 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01485 1164 Gene3D Transferase(Phosphotransferase) domain 1 946 1163 - -
Vimu11g01485 1164 SMART LRR_sd22_2 551 580 - -
Vimu11g01485 1164 SMART LRR_sd22_2 215 247 - -
Vimu11g01485 1164 SMART LRR_sd22_2 722 748 - -
Vimu11g01485 1164 SMART LRR_sd22_2 599 626 - -
Vimu11g01485 1164 SMART LRR_sd22_2 359 382 - -
Vimu11g01485 1164 Gene3D Phosphorylase Kinase; domain 1 828 945 - -
Vimu11g01485 1164 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 179 - -
Vimu11g01485 1164 SUPERFAMILY L domain-like 474 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01485 Vimu-Chr11 17453123 17457240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01485 21 1159 Receptor kinase-like Gene Family AT5G46330 54.743 0.0 1164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu11g01485 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01485 K13420 - gmx:100788119 1953.72