Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01483 ATGGCTGCTGCATCCTCCATGGCACTCTCATCCCCCTCCTTGGCTGGCAAAGCCGTCAAGCTTGCCCCATCAGCCCCCGAAGTCGGCAGGGTCAGCATGAGGAAGACCGTCACCAAGCAGGTTTCCTCCGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACCGGCGAGTTCCCAGGTGACTACGGTTGGGACACTGCTGGGCTTTCCGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTCATCCACTCCAGGTGGGCCATGCTGGGAGCCTTGGGCTGCGTCTTCCCCGAACTCTTGTCCCGCAACGGCGTGAAATTCGGCGAGGCCGTGTGGTTCAAAGCTGGTTCACAGATCTTCAGCGAGGGTGGGCTCGACTACTTGGGCAACCCAAGCCTCATCCACGCTCAGAGCATCCTCGCCATCTGGGCCACCCAAGTCATCCTCATGGGCGCCGTCGAGGGTTACCGTATTGCCGGTGGGCCTCTCGGTGAGGTCACTGACCCCATTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTCGCTGACGACCCAGAGGCTTTCGCTGAGCTCAAGGTGAAGGAACTCAAGAACGGTAGGTTGGCCATGTTCTCCATGTTCGGGTTCTTCGTCCAGGCCATTGTCACCGGAAAGGGACCATTGGAGAACCTCGCCGACCACCTTGCTGACCCAGTCAACAACAACGCTTGGGCCTACGCCACCAACTTCGTCCCCGGAAAGTGA 792 0.6048 MAAASSMALSSPSLAGKAVKLAPSAPEVGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01483 263 Gene3D Chlorophyll a/b binding protein domain 54 256 - -
Vimu11g01483 263 FunFam Chlorophyll a-b binding protein, chloroplastic 54 256 - -
Vimu11g01483 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 263 IPR001344 GO:0009765|GO:0016020
Vimu11g01483 263 Pfam Chlorophyll A-B binding protein 63 229 IPR022796 -
Vimu11g01483 263 SUPERFAMILY Chlorophyll a-b binding protein 46 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01483 Vimu-Chr11 17441601 17443631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01483 3 263 Chloroplast and Mitochondria Gene Families AT1G29930 88.722 1.05e-171 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01483 K08912 - gmx:100805310 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01483 11 17441601 17443631 Vimu11g01483 11 17441601 17443631 ECH