Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01473 ATGTCTGTTGAACCTAAAGAACTTTACTACCAGGACCTTGTCCTAGACCACAACAATCACCACGGAACAGTAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGATCTGACATGTACCAAAAGCACTTTTCCACTTCCTTAATCCCTGCTGCTTCAACACCCTATGACTCACAACCCTTTGATCCTTCCTACATGACCTTCACCGAGTGTTTGCAAGGAGGCATGGATTACAATTCTCTTGCAACTTCCTTTGGCCTTTCTCCTTCCTCATCAGAGGTTTTCTCATCTGTTGAAGGGAACCACAAACCTGCAGAAGGAGGAGATGGAGGAGGAGCCACTGCTGCCACTGAAACCCTTGCCACTCTTAACTCATCTATCTCTTCTTCATCTTCTGAAGCCGGGGCTGAAGAAGATTCAGGAAAGAGCAAAAAGGATAGGCAGGTGAAGACAGAAGAAGGAGGAGGAGGAGAAAACTCTAAGAAAGGAAACAAGGATAAGAAGAAAGGAGAGAAGAAACAAAAGGAGCCAAGGTTTGCTTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTATCCAAGGAGCTACTACAGATGCACTACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACATCGCTGAGAGGGAATGCGGCCGCAGGAATGTTCACACCTTCTTTGCTCGCCACACCAACTCCACTTGCAGCCGGGTCAAACTTCCCTCAAGATCTCTTCCTTCACATGCATCATCAGCATCACCACCACCACCCTCACCATCACTTTCACAACACCCTCTTCTCCACACAATCAACAAACGCCGTTACCACCACCACCACCGTTACCACTGCTTCCACTCCTCCTTCCATTTACTCATCCTATAACATTAACAACTCTCTTCTTCACAACCAGTATCTTCCTTCTGAATATGGCCTCCTTCAAGACATAGTCCCTTCCATCTTCCACAACAAGACACACCACCAGAATTAA 1101 0.4732 MSVEPKELYYQDLVLDHNNHHGTVAAAAGGGGGGGSDMYQKHFSTSLIPAASTPYDSQPFDPSYMTFTECLQGGMDYNSLATSFGLSPSSSEVFSSVEGNHKPAEGGDGGGATAATETLATLNSSISSSSSEAGAEEDSGKSKKDRQVKTEEGGGGENSKKGNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSLLATPTPLAAGSNFPQDLFLHMHHQHHHHHPHHHFHNTLFSTQSTNAVTTTTTVTTASTPPSIYSSYNINNSLLHNQYLPSEYGLLQDIVPSIFHNKTHHQN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01473 366 MobiDBLite consensus disorder prediction 116 135 - -
Vimu11g01473 366 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01473 366 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01473 366 MobiDBLite consensus disorder prediction 88 179 - -
Vimu11g01473 366 MobiDBLite consensus disorder prediction 136 179 - -
Vimu11g01473 366 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 294 IPR044810 GO:0003700
Vimu11g01473 366 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01473 366 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01473 366 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01473 366 FunFam WRKY transcription factor 57 175 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01473 Vimu-Chr11 17299642 17301203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01473 60 358 WRKY Transcription Factor Family AT4G18170 50.489 5.21e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g01473 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01473 - - gmx:100787050 469.929