Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01470 ATGGAAAAGGAACCTCTGCTTCCATATTTCAGCCCCAGAAAGAAGCCCCTGGCATTGTCACCGCTATGTCCCTTGCCAGAGCACGAGGATATGGTTCTTCCAATGACCCCAATGGAATTCAAGGACCGTCTCATCTTTGGTCCTGCTTGTGCTACCCCAAGGGACCCTTCACCTTTGGCCGATGCCTTAATACTCCCCCTCAATTCCCCAAAATGTTCCTCTTCTACCTCGCAGGACTGTGCATCGCCATCACGGTTTGATTCCCAGTCCCAACAACCATCCTCTTGGCTCCTTGACCCCAATTATTCCTGGCGGAAAACAAACCTTCATCGCTCCAAAACCGCGCCGGCCATGGCGGTGATCAGCGATTTCAACCCCCAATCCTCTGTGCCAAGGCCGAAATTTGGCAGCCAGAGTATTGTTCGCCAGGGTGTGATTCTTCTTGTTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTTCTGCTTCCGAGACTCATCCTGTAGTTGATGCGTTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGACATCACACCGAATAGCACAGCCACTAAACTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGCTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCAGTGAAGGGAAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGATTGAAGGTGGCGCTGGCGTTGGGAGTTGTGGTGATTTGTATTGGGGTAGGTGTGGCGGTTATGCATTTTGTTGAGAAGCTTGGTTGGTTGGACTCTTTTTATCTTTCAGTTATGTCGGTTACTACGGTTGGGTATGGAGACCATGCTTTCAAGACCATGCATGGCAGGATCTTTGCTGCAATTTGGTTGCTCGTGTCAACTCTTGCCGTGGCTCGAGCGTTCCTCTATTTGGCGGAGGCAAGAGTGGATAAGCGGCAAAGGATGATGGCGAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCAGACATAGACAACAATGGCTTTGTTAGTGCCCAGAAATGTATTCACCACCTAGTTGTACAAGACCCCCCCATCCCATGCATCATGAACCACTTTTTGAAGTATGAATTTAGAATTCGATTGAATGCCTACTGA 1236 0.4668 MEKEPLLPYFSPRKKPLALSPLCPLPEHEDMVLPMTPMEFKDRLIFGPACATPRDPSPLADALILPLNSPKCSSSTSQDCASPSRFDSQSQQPSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNPQSSVPRPKFGSQSIVRQGVILLVLYLALGVVIYWFNRHNFSASETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVAVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRQRMMAKWILGQDMTVSEFLAADIDNNGFVSAQKCIHHLVVQDPPIPCIMNHFLKYEFRIRLNAY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01470 411 Gene3D - 139 239 - -
Vimu11g01470 411 FunFam Two-pore potassium channel 3 248 362 - -
Vimu11g01470 411 FunFam Two-pore potassium channel 5 129 239 - -
Vimu11g01470 411 Pfam Ion channel 146 226 IPR013099 -
Vimu11g01470 411 Pfam Ion channel 271 340 IPR013099 -
Vimu11g01470 411 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu11g01470 411 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu11g01470 411 MobiDBLite consensus disorder prediction 75 99 - -
Vimu11g01470 411 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 145 363 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu11g01470 411 SUPERFAMILY Voltage-gated potassium channels 255 359 - -
Vimu11g01470 411 Gene3D - 248 358 - -
Vimu11g01470 411 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01470 Vimu-Chr11 17225717 17227031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01470 4 385 Ion Channels AT4G18160 62.850 1.62e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01470 K05389 - gmx:100804249 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01470 11 17225717 17227031 Vimu11g01470 11 17225717 17227031 ECH