Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01456 ATGGTCACAAGATACCCAAATGAAAAGAATAACCCTTCAAGTAGACATTTCATCCATGGATATCACTTGATACAAGGACAGATGAACCATGGAATGGAAGACTATATTTTCGCTCAACGTAGGAATCTCGATGGCTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCCAAATACTTACGAAACCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAAAATCCAGGGCAGGCTATTAAGAAAGCATGCAAAGCAACGGATGATCAGATTTTAGAAAATATAGCTGATTCAAGTGGAGGATCAACAGCAGTTGCAGCAATACTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTCGAGCAATATCATGCAACAAAGGTCGAGCAAAGCCACTTACTGTGGATCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGAGGTTTTGTGTCTAAGAGACCCGGGAATGTTCCAAGAGTGGATGGGCAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGGAGCACATTACGGCAGAACCAGATGTGACCATTCAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAAGAGGCTTGTGACTGTATCAAGAATGTAGATGGTGCGCAGAAAGCAGCTAAGAAATTAGTTAAAGAAGCTATATCTCTAGGAAGCTGTGATGATATTTCATGCATAGTTATAATGTTCTAG 795 0.4063 MVTRYPNEKNNPSSRHFIHGYHLIQGQMNHGMEDYIFAQRRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILSEPGFWENPGQAIKKACKATDDQILENIADSSGGSTAVAAILVNGVKLLVANVGDSRAISCNKGRAKPLTVDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKEHITAEPDVTIQKIDEDTEFIILASDGLWKVMTNQEACDCIKNVDGAQKAAKKLVKEAISLGSCDDISCIVIMF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01456 264 SMART PP2C_4 8 262 IPR001932 -
Vimu11g01456 264 SUPERFAMILY PP2C-like 14 264 IPR036457 -
Vimu11g01456 264 Pfam Protein phosphatase 2C 30 257 IPR001932 -
Vimu11g01456 264 Gene3D - 17 264 IPR036457 -
Vimu11g01456 264 ProSiteProfiles PPM-type phosphatase domain profile. 18 264 IPR001932 -
Vimu11g01456 264 CDD PP2Cc 17 262 IPR001932 -
Vimu11g01456 264 PANTHER PROTEIN PHOSPHATASE 16 262 IPR015655 GO:0004722|GO:0006470
Vimu11g01456 264 FunFam Probable protein phosphatase 2C 39 10 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01456 Vimu-Chr11 17028348 17031019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01456 15 264 PP2C-type Phosphatase Gene Family AT3G15260 58.566 1.21e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01456 - - gmx:100814772 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01456 11 17028348 17031019 Vimu11g01456 11 17028348 17031019 ECH