Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01402 ATGGTGAAAATTTCAGTTGGTGGGTATGATGACGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGGGAAGAGGAGGACGAAGAAGAAGAACGAAACACGCGACGAAGCTTTGAAATTGTTGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCTTCCTGCTCCACCCCAACGTGCTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCTCCTGTCTTCCAGTGTGAGAATGGACACATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGACTCTATTAAAATGTCGTGTCCGAATGCAAATTATGGATGCACAGAAACGTTTTGTTACAGCAAGAAAAACGACCATGAGAAGGAATGCATCTATCTGCCATGTCTATGCCCACATAGTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTTAGCCACAGACATGTAGACTCTGGAACACTGTTTACATATGATAAATTTTTCACAGTCATCTTCAGTGCTGACCAGAAAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCAGCTGGGACATAAAGTCCGCATTAGTTGCATCGGCCCCAAGTCCGCGGGAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATACTGCAATCTTTTACTAAGATCATTCAAGGTCAATATGCTGATCCTCCTTCAAACGCGTTCCTTTTGATTCCCTCTGGGTTTTTTGGCCCTCTACAACTGAAACTAGACATTCGCATTAAGTCACATTAA 951 0.4416 MVKISVGGYDDGEGPSNRNQKRRREEEDEEEERNTRRSFEIVDRSIELQEREDHLPAPPQRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHSGCDFVASSKELFLHVSHRHVDSGTLFTYDKFFTVIFSADQKTIVLQEKNDGNLFIVHNNHEQLGHKVRISCIGPKSAGEFQYEVLARFRGSTLILQSFTKIIQGQYADPPSNAFLLIPSGFFGPLQLKLDIRIKSH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01402 316 CDD RING-HC_SIAHs 87 124 - -
Vimu11g01402 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 195 IPR013083 -
Vimu11g01402 316 ProSiteProfiles Zinc finger SIAH-type profile. 142 200 IPR013010 GO:0008270
Vimu11g01402 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 26 315 IPR044286 -
Vimu11g01402 316 MobiDBLite consensus disorder prediction 1 70 - -
Vimu11g01402 316 SUPERFAMILY RING/U-box 88 130 - -
Vimu11g01402 316 MobiDBLite consensus disorder prediction 15 57 - -
Vimu11g01402 316 Pfam Seven in absentia protein family 132 276 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu11g01402 316 SUPERFAMILY TRAF domain-like 142 313 - -
Vimu11g01402 316 ProSiteProfiles Zinc finger RING-type profile. 89 124 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01402 61 313 C3H Transcription Factor Family AT2G41980 27.138 1.09e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01402 K04506 - gmx:100778869 498.434