Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01398 ATGTGTGCAACAGTGCTACAAGACCTCAAAAACTTACATCAACCCCCAGGCTTTAACTCTACAATTCTCTCAAACTGTCTCCACAATCCATCTCTTAGGTACTGCTCTTCGTCCCCAATGATGGACTTTGATGAAATATTCAAGTTTACCATTGTTGCAGCCCATCTCTGCAATGAATCCAAGAACCCCAATTGTGTAGAGTCATTCCCCAAAGTTGATCTTAGAAACCGCCCAAGTATTGCACCACTTTATTTGTCCTTCGATTTCTTTTGGAAATATTGCCCCTTGAGCATTATGTCTATTGATTTCTCCAACAATTCTATGAAGGGTGGTTTTCCAACCCAAGTTTTCTATTGCTCCCAAATCCAGTCTCTTGATCTGAGTATCAATGCATTTTCTGGGGACATCCCAATTCAAACTTTCTCTTCCTTGACCAACCTCACTTTTCTCAACCTCTCCTATAATTGTTTTTCTGAGAGTAAACTGTCTGATTCCCAATTCTTCAAAAGGTTCAATTCTTCTAGTTTTCTTCATTCGGGTGCTCTCTTGGATCCAAAAAAGTTTACTGCGAAGGCTGTTGTTCTGTTAGTTTGCTTTCCCATCCTTGTCATTTTTATGGTAATTTCCTTGGTATGGCTTTGTTTCCAAAGGCCTGATTTTCTCCCGAGTAAACTTCAAAGAGGTACGACGTTTACACCAGCAATTCTAAAGGCAGCCACTGATGGTTTTTCGGATAAGAATTTGGTGGGGATGAGTGATGTTGTTCACATCTACAAAGGGATGTTGAGAGATGGCACTGAAGTGAAAATTGAGATGTACTGGGATGATATATCAAGGGATAGTTACCGTAGATTTGTTGAGGAATGCAAGATTCTGTCAAAGTTACACCACAAAAACCTTGTCAGAGTTCTGGGGTGGTGTAAGAGCAGAAAATTCAGGGCCCTTGTAACAGAATGGACAAGAGAAGAAAATGTTGAAATGTGGTTATCAGGGTCAGGTCCACCATGGAATCATAGAGTGAAAGTGTTAATGGGGATTGTAGAATGCATGCGTTATATGCAGAAGGAATGGCCTGAAATTGACTACGAACTCGACACAAGTAGTATTTTGCTGTCCGACAATACGGAACCATTAATTTCAAGGTTCAAAGTTGGAGATCACAACAACAACGAAACAAAGATACATAAGTTTGGAGTATTTGTGCTGGAGCTGATACTAGATAAGAAGTTTGATGGAGGTGATGCTGAATTAGTTAGGTACATGAGAACCCTTAATGCTGCAGATTTGGTGCAGATGATTGATGAGAGAATAGAAGTAACTGAAGCTAATTTTCATCAAGTTAAGCAGGCACTGTCTCTGGGATTAATGTGCGTAGATCAATCGAACAGTGAGAAGCCAAGCTTGAGCATGATACTTAACACTGTAGCAAGAGCCTACAAAACGTGCCTGTTCAGACCAATTAAG 1464 0.403 MCATVLQDLKNLHQPPGFNSTILSNCLHNPSLRYCSSSPMMDFDEIFKFTIVAAHLCNESKNPNCVESFPKVDLRNRPSIAPLYLSFDFFWKYCPLSIMSIDFSNNSMKGGFPTQVFYCSQIQSLDLSINAFSGDIPIQTFSSLTNLTFLNLSYNCFSESKLSDSQFFKRFNSSSFLHSGALLDPKKFTAKAVVLLVCFPILVIFMVISLVWLCFQRPDFLPSKLQRGTTFTPAILKAATDGFSDKNLVGMSDVVHIYKGMLRDGTEVKIEMYWDDISRDSYRRFVEECKILSKLHHKNLVRVLGWCKSRKFRALVTEWTREENVEMWLSGSGPPWNHRVKVLMGIVECMRYMQKEWPEIDYELDTSSILLSDNTEPLISRFKVGDHNNNETKIHKFGVFVLELILDKKFDGGDAELVRYMRTLNAADLVQMIDERIEVTEANFHQVKQALSLGLMCVDQSNSEKPSLSMILNTVARAYKTCLFRPIK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01398 488 SUPERFAMILY Protein kinase-like (PK-like) 223 475 IPR011009 -
Vimu11g01398 488 SUPERFAMILY L domain-like 64 167 - -
Vimu11g01398 488 Pfam Protein tyrosine and serine/threonine kinase 255 383 IPR001245 GO:0004672|GO:0006468
Vimu11g01398 488 ProSiteProfiles Protein kinase domain profile. 243 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01398 488 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 97 170 - -
Vimu11g01398 488 Gene3D Phosphorylase Kinase; domain 1 219 319 - -
Vimu11g01398 488 Gene3D Ribonuclease Inhibitor 42 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01398 Vimu-Chr11 15844556 15846115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01398 100 482 Receptor kinase-like Gene Family AT5G45780 24.283 5.04e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu11g01398 PK_Tyr_Ser-Thr 2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01398 - - gmx:100779045 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01398 11 15844556 15846115 Vimu11g01398 11 15844556 15846115 ECH