Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01390 ATGTGCAACATCCTTGACCCAATTATGGACAACTATCAAGGTGATTTGAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCATGGGAACTTCATCATCGAAAGCCTGTGCTCCTTCTCTCGATCACTGGCAGTTCTCTTCCGTTTTGGAAGGGTTTGATGGCGACTTTGGTGATCCATTCTCAAACACGAGAGATCCCTTTCTACACCAGCTTGAATTGCCTGCTTGCTTTAACAGCGCAACAAGTTCTGCAGAAATTAGCAGTTCTGGGGCATTGGAAGAAGCAACTTTTTTTGGTGGTGGGGTTGCTGCTAGTAGTAGTAGTAGTAGAAACAGCTGTGTTTTGAAAGAAACGATTTTTGAGGATGATGACACGCGAAGGCCTTGTAATAGCATATTGGCAAACATGACTCAGATCTCTCCCCCCAATGATAAGTTACCCATGTCGCCATTGGTGGAATCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTTTGGTGATACCATGATTAATGTGAAGACTTCTGAAGATGATTGCTTGGTGGGTAGCTACAACACAAAAGAAATGCAGATCTCACCTCCACGGAATCCATGTCTTAAGAGAAGGAAGAGTCTGGCAAAGAAATCTATTTGTGTTCCTGCACCAGCTGCACCAAATAGCAGACAAAGTGGCGAGGTAGTCCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACCTGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCGACTCACAGAAATTCTCTCGCTGGTTCTTCTCGATCCCAACCTTCATCCAAGGGAAACAACTTTGGTGCTTCAAAAAATGCAGAAACCAGTCCCCAAAACGATGAAGAGCAGCAGGAGGAGAGCAACAGTGACAGCAATAATGTGAATAACAGTGCATATGTTCAGGAAGATGGAGAATTCAGTGACATTGGACTCCCTTATAAGCCAATATCCAATATGAAGAGCTACCAACAACAACAACAACAACTTGATCAGGGTTTGTTTGCAGAGTTTGGAGAAATTGAAAAAGCTCAGTCACTAAACCTAATGTCTCCACCACAAGGTTTTGATGATCACCAAATGAAATCCAACGCTTTAGATTCATTTCCATATCTTTGA 1260 0.4357 MCNILDPIMDNYQGDLSDIIRASGASYGSCSMGTSSSKACAPSLDHWQFSSVLEGFDGDFGDPFSNTRDPFLHQLELPACFNSATSSAEISSSGALEEATFFGGGVAASSSSSRNSCVLKETIFEDDDTRRPCNSILANMTQISPPNDKLPMSPLVESLSRALKPSGVVFGDTMINVKTSEDDCLVGSYNTKEMQISPPRNPCLKRRKSLAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNSLAGSSRSQPSSKGNNFGASKNAETSPQNDEEQQEESNSDSNNVNNSAYVQEDGEFSDIGLPYKPISNMKSYQQQQQQLDQGLFAEFGEIEKAQSLNLMSPPQGFDDHQMKSNALDSFPYL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01390 419 MobiDBLite consensus disorder prediction 285 325 - -
Vimu11g01390 419 MobiDBLite consensus disorder prediction 396 419 - -
Vimu11g01390 419 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01390 419 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01390 419 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01390 419 MobiDBLite consensus disorder prediction 336 350 - -
Vimu11g01390 419 FunFam probable WRKY transcription factor 14 207 287 - -
Vimu11g01390 419 MobiDBLite consensus disorder prediction 285 359 - -
Vimu11g01390 419 SUPERFAMILY WRKY DNA-binding domain 231 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01390 419 Gene3D WRKY domain 222 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01390 419 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 391 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01390 Vimu-Chr11 15757383 15760893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01390 1 410 WRKY Transcription Factor Family AT2G34830 40.132 6.92e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g01390 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01390 - - vra:106752855 755.747