Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01386 ATGTTGAATGCTGAGAAGAATAGGGATGTGAGGGAAGAAATTGATAGCCAGCATAGGAAGAGTCTATCGCCAGAAAGGAGGCTGCGACCGAGAGAGCAACTACACACACTGTACCTCTCACCGATCGTCTTCTTCCTCGTCAAACGTCTACGGTTCCTCTTTCATCTTCGGCGATTGTCAGAGCATAAGAGAGCTTGTTTCATGGAGCAGTACGAGAAGGTTGAGAAGATAGGTGAAGGAACCTACGGCGTTGTTTATAAGGCTCGTGACCGCGTCACCAACGAGACCATCGCATTGAAGAAGATTCGCCTGGAGCAGGAGGATGAGGGGGTCCCGAGCACCGCCATTCGAGAGATTTCTCTCTTGAAAGAAATGCAGCACCGCAACATTGATGTAGTTCACAGTGAGAAGCGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCACCAGAATTTGCAAAAGATCTACGACAAGTTAAAATGTTCCTTTACCAAATTCTCTGTGGGATTGCGTATTGTCATTCACATAGAGTTCTTCATAGAGATTTAAAACCACAGAATTTGTTGATAGATCGCAGCACTAATTCACTGAAGCTGGCAGATTTTGGACTGGCAAGGGCATTTGGAATTCCTGTTAGAACATTTACACATGAGGTAGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCCTCGTTATTCTACACCAGTTGATATTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAATCAACGACCTCTCTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGGAACTTGGCTGTTTTGAGATGCCCAAGTACTATAATAGGTACTATGAGATGCCTATGTCCCACATTGAGTAGTATGAGATGCTCCATGAGAATCTTGGGTACACCAAATGAAGATACGTGGCCTGGAGTGACATCTTTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCAGCCGAAGGACCTGAAAACTGTCGTTCCAAATCTTGATCCAGCTGGTCTTGATCTTCTTTCTATGCTCGGGAGAAAGGAAACACCTTTCCTAGAGGAAATAATTTCCATTGTTCATGTAGAAGAAAGTAAGAGAAGTGTGATGCTTGAGCCTCAACTAGTACATGAGTCTGCCTTGCTTACTAAACTAGAAATGTTTGAGAAAGGAAAGGGACAAAATATTGATTCCCAATGA 1245 0.4329 MLNAEKNRDVREEIDSQHRKSLSPERRLRPREQLHTLYLSPIVFFLVKRLRFLFHLRRLSEHKRACFMEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDLRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSPRYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRNLAVLRCPSTIIGTMRCLCPTLSSMRCSMRILGTPNEDTWPGVTSLPDFKSAFPKWQPKDLKTVVPNLDPAGLDLLSMLGRKETPFLEEIISIVHVEESKRSVMLEPQLVHESALLTKLEMFEKGKGQNIDSQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01386 414 Gene3D Transferase(Phosphotransferase) domain 1 149 385 - -
Vimu11g01386 414 Pfam Protein kinase domain 71 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01386 414 Gene3D Phosphorylase Kinase; domain 1 68 147 - -
Vimu11g01386 414 CDD STKc_CDK1_CdkB_like 71 360 - -
Vimu11g01386 414 PANTHER CELL DIVISION PROTEIN KINASE 69 360 - -
Vimu11g01386 414 FunFam Cyclin-dependent kinase 2 (CDK2L) 68 147 - -
Vimu11g01386 414 MobiDBLite consensus disorder prediction 1 26 - -
Vimu11g01386 414 ProSiteProfiles Protein kinase domain profile. 71 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01386 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vimu11g01386 414 FunFam CMGC family protein kinase 148 290 - -
Vimu11g01386 414 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vimu11g01386 414 SMART serkin_6 71 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01386 414 SUPERFAMILY Protein kinase-like (PK-like) 66 287 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01386 Vimu-Chr11 15659395 15672167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01386 68 360 Core Cell Cycle Gene Families AT3G48750 78.114 5.30e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vimu11g01386 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01386 K02206 - gmx:100127418 492.271