Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01382 ATGGAGTGGAGGCGTCGGACCAAGAAGCAGGCTCAGCCGCGGTTGGAGCGACTCAACGCCAAAAAGGGCTTCAATTACCAACCACCACCGTCTCCGCCGTCTCCTTCTTCAACCTCTTCTTCCTCCCATTTCGATCGCCAAACCAGCTTCCGCCTCTTCGGCGTCGACGGCGAGTTCGACCGCATCTTCCAGACCTTGGGTCTGTCTGGCCCGGAAGACTTCGCCATCCCAACAGCAGACTGGGAAGCCCGCAAGGCCCGCGTCGCTTCCTCCAAGGCCCCCGGGCCCACCCCTACCCCTAACGCGCTTATCCACTCTTCTACCGAGATCCACCCCCTTTCCGTCACCGCTACTTCTGCGACTACCCTCCAAGACGATGTCGTTTCAGTACACGTTTCCGTTATGGGTTCCTCCCCTTGGTCCTCCGGGGAGCATGACGCGGGTAGGGGTAGTGTCGGCAGGTTGAGGAACGGAGAAAGGAGCGTGCTTTTCACCGATTCAGGTTCCTTCACCACTTCCCACGATGATGACAGTGACATTGGCGGCGAGAGGGTTAGTTCGGTTTCTATTTCCGCCGCCCCGGATGAGCTGGTTGTGCCTTTTGTTTCCTCCTTTTCCTTTGAGTGGTTCAGACGGACTTTCTCCTCCTGGCAAAAAGGTGACGTCTTGGGAAATGGGTCTTTCGGAACCGTCTATGAAGGCTTCACTGATGAGGGATTCTTTTTTGCCGTAAAGGAGGTGTCTTTGCTGGATGAAGGTAATCAGGGAAAACAGAGTATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTTGAGCATAAAAACATAGTTCGATATTATGGCTCGGACAAGGACAAAAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGGTCATTAGCAAGTCTCTATCAAAAGTATCGTTTAAATGATTCCCAAGTTTCTGCATACACAAGGCAGATTTTATGTGGCTTGAAGTATCTTCATGATCATAATGTGGTCCACAGGGACATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAGATCAAGCAAAGGCTCCCCTTACTGGATGGCCCCTGAGGTTGTTAACTTAAGGGACCAAGGTGGTTACGGGTTAGCCGCCGACATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACACGCCAGCCTCCTTATTCGGATTTGGAAGGAATGCAAGCATTATTTCGGATTGGCAAGGGTGAACTTCCAAGCATTCCGGATTATTTATCTAAGGATGCCCAAGATTTCATTCGTGAATGCTTACAAATTAACCCAAATAAACGTCCAACTGCAGCTCAGCTATTGGATCACCCATTTCTAAGGAGAACATTACTGTCTCCCTTAAGTTTTGCTTCTCCTCAAAGGAATATGTATCGGACAAGTTTAACGGGTTTGCAGATATCTAGAGTTGCACCTAACAACTCTCAGTCTTGA 1527 0.4866 MEWRRRTKKQAQPRLERLNAKKGFNYQPPPSPPSPSSTSSSSHFDRQTSFRLFGVDGEFDRIFQTLGLSGPEDFAIPTADWEARKARVASSKAPGPTPTPNALIHSSTEIHPLSVTATSATTLQDDVVSVHVSVMGSSPWSSGEHDAGRGSVGRLRNGERSVLFTDSGSFTTSHDDDSDIGGERVSSVSISAAPDELVVPFVSSFSFEWFRRTFSSWQKGDVLGNGSFGTVYEGFTDEGFFFAVKEVSLLDEGNQGKQSIFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILCGLKYLHDHNVVHRDIKCANILVDVSGAVKLADFGLAKATKFNDVRSSKGSPYWMAPEVVNLRDQGGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGKGELPSIPDYLSKDAQDFIRECLQINPNKRPTAAQLLDHPFLRRTLLSPLSFASPQRNMYRTSLTGLQISRVAPNNSQS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01382 508 PRINTS Tyrosine kinase catalytic domain signature 295 308 IPR001245 GO:0004672|GO:0006468
Vimu11g01382 508 PRINTS Tyrosine kinase catalytic domain signature 330 348 IPR001245 GO:0004672|GO:0006468
Vimu11g01382 508 PRINTS Tyrosine kinase catalytic domain signature 397 419 IPR001245 GO:0004672|GO:0006468
Vimu11g01382 508 PRINTS Tyrosine kinase catalytic domain signature 440 462 IPR001245 GO:0004672|GO:0006468
Vimu11g01382 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Vimu11g01382 508 ProSitePatterns Protein kinases ATP-binding region signature. 223 245 IPR017441 GO:0005524
Vimu11g01382 508 ProSiteProfiles Protein kinase domain profile. 217 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01382 508 SMART serkin_6 217 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01382 508 MobiDBLite consensus disorder prediction 1 16 - -
Vimu11g01382 508 SUPERFAMILY Protein kinase-like (PK-like) 197 494 IPR011009 -
Vimu11g01382 508 Gene3D Transferase(Phosphotransferase) domain 1 215 495 - -
Vimu11g01382 508 Pfam Protein kinase domain 218 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01382 508 FunFam Mitogen-activated protein kinase 1, putative, expressed 215 484 - -
Vimu11g01382 508 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g01382 508 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01382 Vimu-Chr11 15597562 15602151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01382 4 90 MAP Kinase Kinase Kinase AT4G08500 39.796 2.07e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g01382 Pkinase 1.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01382 K13414 - gmx:100820552 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00337 2 1883561 1886560 Vimu11g01382 11 15597562 15602151 PCT