Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01380 ATGGGTAGAACCCAAAACCCCACAAACATGGAAATTGATCTATCTTTGAAGATAGATGCTGATGATGATGATGATGAACAAAAACCACAAGTTCATCAGCAAGTCAAAGAGTATAACCACGAACAAAAAATGCCACAGATTCTTGATCATAACAAGGAAGAAGTCCCTGAAGCTGCAGCTGGTGAAATAGAAGATGATGCATCAGTGGTACAAACATCTTTTCAAGATAACACAAAAACCAAAGAGTTAAGTGTCCTGCAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAGATGAAATTCTCAGCTATCAAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCCCTTCAAGACATTGCCACCACCAGCGGTGAAGGACCATCGAGAATTCTTGAGATCCTGAATAAGAAAATTCAAAGTGCTCCATCTCCTCCAAACCCTGATGATGACAGTTTAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTACAGCCAAGCACAAGTCAAAAAGAAAGTGATGTGGGAAACAAGGAAGACAGAAAAGATCAGCAATTGGCAAGTTTTGTATCAGTGCAAAACAAACTACAGCGGACACATGAGTTGCCCGGTATCACTACCCATGCTATCTCCCCTCCAAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGGTGCCAGTGGAGAAAATATGGACAGAAAATTGCAAAGGGAAATCCATGTCCACGAGCCTATTACCGTTGCACTGTAGCTCCAGGCTGCCCCGTTAGGAAACAGGTACAAAGATGCATAGATGACATGTCGATTCTTATTACAACCTACGAAGGGACACATAATCATCCACTTCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACTTCTAGTTTCACTCAAGCACCCCTTCCTTATAACACCTTCCACCCATTAAACTCAGCTTCGAATTTCAGGAGCATAAACCCCAGTGATCCATCCAAAGGGGTTGTTCTTGATCTCACAAGCAACCTCAATGAACCACTACGTTTTTCAACCGGTAGCTCCTCAAATACCACAACTGAAAGCCGCTTTTCTTGGATGCCAAACAAATATCATGGTGGTGGTGCAATGACAATGAACAACAATTTTCACAAGCCTAGACCAGTAGTGGACATTCATGATAGAATGTGGAAAGGAGAAGAAAGCAAGCAGCTTGATGAGAATGTTTCTGCAATTGCCTCAGATCCCAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACACTGCTACTCATACTATAGGGACTTCATTTGGTCCTAGAAGTGGCCAAAATGGTAGCTAG 1476 0.4241 MGRTQNPTNMEIDLSLKIDADDDDDEQKPQVHQQVKEYNHEQKMPQILDHNKEEVPEAAAGEIEDDASVVQTSFQDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIKENNKRKDHEISLSLQDIATTSGEGPSRILEILNKKIQSAPSPPNPDDDSLSESELGLSLRLQPSTSQKESDVGNKEDRKDQQLASFVSVQNKLQRTHELPGITTHAISPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQAPLPYNTFHPLNSASNFRSINPSDPSKGVVLDLTSNLNEPLRFSTGSSSNTTTESRFSWMPNKYHGGGAMTMNNNFHKPRPVVDIHDRMWKGEESKQLDENVSAIASDPKFRVAVAAAITSLMNKESHTATHTIGTSFGPRSGQNGS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01380 491 Gene3D WRKY domain 234 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01380 491 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01380 491 MobiDBLite consensus disorder prediction 1 31 - -
Vimu11g01380 491 MobiDBLite consensus disorder prediction 159 202 - -
Vimu11g01380 491 FunFam probable WRKY transcription factor 31 234 311 - -
Vimu11g01380 491 Pfam WRKY DNA -binding domain 250 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01380 491 SUPERFAMILY WRKY DNA-binding domain 242 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g01380 491 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g01380 491 MobiDBLite consensus disorder prediction 177 191 - -
Vimu11g01380 491 Coils Coil 83 110 - -
Vimu11g01380 491 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 64 470 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01380 Vimu-Chr11 15579761 15581987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01380 86 372 WRKY Transcription Factor Family AT1G68150 52.333 4.02e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g01380 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01380 - - var:108321024 822.002