Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01371 ATGAGTGAAGAGGAATTGAAGAGGAAGAAAGAGAAAGAAGAAGGAAAAAAAGAAGGCTTGAAAAGCGGCATGGCGTCGTCGAAGGTTGTTGTCTCGACGAATCCGGATCTGCCACGCGACTCTTCTATATCTCCCCTTTCCTCGCTTCTCCTCTCCGATCTGCACCACTCAACCTCCATGGACGACCTTCTCAAGTCCATCACCCCTTCCGCCGCCAAGACCGTCGACGATGTCTGGAAGGAGATCGTTGCAGGCGCTCACCCCCACCATCCCGCCGGCACCGTCTCTGGAGACAGAAATGCCGCCACCGTCAACGCCACCGCCACCGCCCCAGAGGGCTACGAGGCTATTACCCTGGAGGATTTCCTCACCAAGGCCGGCGCCGTCAGAGAGGAGGACGTGAGAGGGGTTCTGCCCCCTTCTTCCTCTCTCCCCTTTCCTCTCCCTCTGCCCGCCGAAGGCTCCTCCTCCTCCGTTGAGCCCTTTGGAAACGGCGTTGCGCCCACCAATTCGGTTCCCAAAGGGAAGAGAAGGGTCGTGGAGGAACCGGTGGACAAGGCCACGCTTCAGAAGCAGAGGAGGATGATCAAGAATCGAGAGTCCGCTGCTAGGTCCCGGGAACGCAAGCAGGGATTCTTGTGGGAAGTCGAAAATCTTTTGTTCAATGTGGTTTCTAATTTCGAGGCTTATACATCGGAGCTTGAGTATCTTGTTCACCAGCTGGAGCAAGAGAACGCCCGGTTAGTTAACGAAGAGGCCGAGATGAGAAGGCAGAGGAAAAAGCAGCTCTTGGAGTACATAATTCCAGTTGAAGTGATGCCTAAACCCAGAAAGAAACTTCGGAGAGTAAATTCAGCTCAATCATTAAAGTATTCTTCCAGTGATCTACAAGGAAGATCAATGGCTCTGGGTGGGGTTTGTCAGGATTAG 930 0.5366 MSEEELKRKKEKEEGKKEGLKSGMASSKVVVSTNPDLPRDSSISPLSSLLLSDLHHSTSMDDLLKSITPSAAKTVDDVWKEIVAGAHPHHPAGTVSGDRNAATVNATATAPEGYEAITLEDFLTKAGAVREEDVRGVLPPSSSLPFPLPLPAEGSSSSVEPFGNGVAPTNSVPKGKRRVVEEPVDKATLQKQRRMIKNRESAARSRERKQGFLWEVENLLFNVVSNFEAYTSELEYLVHQLEQENARLVNEEAEMRRQRKKQLLEYIIPVEVMPKPRKKLRRVNSAQSLKYSSSDLQGRSMALGGVCQD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01371 309 Gene3D - 189 262 - -
Vimu11g01371 309 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g01371 309 MobiDBLite consensus disorder prediction 26 44 - -
Vimu11g01371 309 Pfam bZIP transcription factor 187 210 IPR004827 GO:0003700|GO:0006355
Vimu11g01371 309 Coils Coil 3 23 - -
Vimu11g01371 309 CDD bZIP_plant_BZIP46 190 264 - -
Vimu11g01371 309 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Vimu11g01371 309 SMART brlzneu 186 268 IPR004827 GO:0003700|GO:0006355
Vimu11g01371 309 Coils Coil 231 261 - -
Vimu11g01371 309 MobiDBLite consensus disorder prediction 1 44 - -
Vimu11g01371 309 MobiDBLite consensus disorder prediction 155 180 - -
Vimu11g01371 309 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 53 284 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01371 Vimu-Chr11 15430561 15433253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01371 72 276 bZIP Transcription Factor Family AT1G03970 40.654 9.21e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g01371 bZIP_1 4.3e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01371 K14432 - gmx:100101890 252.677